DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2224 and CSN6

DIOPT Version :9

Sequence 1:NP_001263108.1 Gene:CG2224 / 43617 FlyBaseID:FBgn0039773 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_524451.1 Gene:CSN6 / 42661 FlyBaseID:FBgn0028837 Length:341 Species:Drosophila melanogaster


Alignment Length:157 Identity:34/157 - (21%)
Similarity:52/157 - (33%) Gaps:49/157 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 PGSGLLLPAASEAAADKTTNSKPSFDRNQKPSYNRTDSLLA-----GSLRLVYVP---------- 253
            |.:.....|.|..|.|||.      |:|.:|..|    ::|     ||:.:...|          
  Fly    14 PSTSSSAAAGSSMAVDKTA------DQNPQPQGN----IMAAAGTSGSVTISLHPLVIMNISEHW 68

  Fly   254 -------GDTMEVFLKLALANTSKNIETCGVLAGHLSQNQLYI-THIITPQQQGTPDSCNTMHEE 310
                   |:..:|:..|......:|||.         .|...: |.:|..:.....|..|...::
  Fly    69 TRFRAQHGEPRQVYGALIGKQKGRNIEI---------MNSFELKTDVIGDETVINKDYYNKKEQQ 124

  Fly   311 --QIFDVQDQMQLITLGWIHTHPTQTA 335
              |:|.     .|..:||..|....||
  Fly   125 YKQVFS-----DLDFIGWYTTGDNPTA 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2224NP_001263108.1 USP8_dimer 16..119 CDD:286108
MPN_AMSH_like 247..419 CDD:163697 20/109 (18%)
CSN6NP_524451.1 MPN_CSN6 52..335 CDD:163694 20/109 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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