DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2224 and stambp

DIOPT Version :9

Sequence 1:NP_001263108.1 Gene:CG2224 / 43617 FlyBaseID:FBgn0039773 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001120237.1 Gene:stambp / 100145287 XenbaseID:XB-GENE-5926871 Length:416 Species:Xenopus tropicalis


Alignment Length:432 Identity:183/432 - (42%)
Similarity:257/432 - (59%) Gaps:41/432 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SMGDVEPQERMKHLSHCGNLIEVDKNMPVTRYYRSGTEMLRMANVYLREGNHENAFILYLRYMTL 73
            |...:.|:||::.|...|..:||:.::|..||||||.||:||||:|..||:.|||||||.:|:||
 Frog     5 SDASLPPEERLRALVLKGTSVEVNDDIPPKRYYRSGVEMIRMANIYAGEGSTENAFILYNKYITL 69

  Fly    74 FIEKIRQHPDYGSVKA-EVRDINRKIKDEIMPTTEKLRAKLLTHYQREYEQFLASKEAERVKELE 137
            ||||:.:|.||.:..| |.:|..:|:|:...|..|:|:.:|...|::||:::     :|:.::.|
 Frog    70 FIEKLPKHRDYKTANAPEKKDTLKKLKEVAFPKAEELKKELHKRYKKEYDEY-----SEKKRKEE 129

  Fly   138 RERERERERQRQKEREKAGSSAIPSLIPANLHVLIDEGNQPSAPDLGLLDQVVYPNDFPTGANRS 202
            .||.|.:..|:|.:.||.             .|.:.:..|.........::::...:......|.
 Frog   130 EERSRRQALQQQLDAEKQ-------------RVALMKQQQEQQEQFQAFEEMIRRKELEAERLRI 181

  Fly   203 L---------PGS--GLLLPAASEAAADKTTNS-------KPSFDRNQKPSY--NRTDSLLAGSL 247
            |         |||  |||:|..:|........|       .|:.||:.|||.  :....:.:..|
 Frog   182 LHQFSKDDSEPGSPGGLLIPGVNEPPVTSLLPSYGTIQPHPPAVDRSLKPSSYGSHRSGVTSDGL 246

  Fly   248 RLVYVPGDTMEVFLKLALANTSKNIETCGVLAGHLSQNQLYITHIITPQQQGTPDSCNTMHEEQI 312
            |.|.:|.|....||:|:..||.:.:||||:|.|.|.||:..:||:|.|:|.|.||.|||..||::
 Frog   247 RHVKIPRDVCCKFLQLSENNTQRGVETCGILCGKLMQNEFTVTHVIVPKQSGGPDYCNTESEEEL 311

  Fly   313 FDVQDQMQLITLGWIHTHPTQTAFLSSVDLHTHCSYQIMMPEALAIVCAPKYNTTGFFILTPHYG 377
            |.:|||..|||||||||||||||||||||||||||||:|:||::||||:||:..||||.|| .||
 Frog   312 FLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLT-DYG 375

  Fly   378 LDYIAQCRQSGFHPHPNDPPLFMEAQHIRMDNQAKIKVIDLR 419
            :..|..|||.|||||..|||||..:.|:.:..| .:.|:|||
 Frog   376 MKEIGDCRQKGFHPHCKDPPLFSASSHVSVTEQ-DVTVMDLR 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2224NP_001263108.1 USP8_dimer 16..119 CDD:286108 49/103 (48%)
MPN_AMSH_like 247..419 CDD:163697 100/171 (58%)
stambpNP_001120237.1 USP8_dimer 13..115 CDD:286108 48/101 (48%)
MPN_AMSH_like 246..416 CDD:163697 100/171 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 146 1.000 Domainoid score I4514
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4719
Inparanoid 1 1.050 327 1.000 Inparanoid score I2431
OMA 1 1.010 - - QHG49824
OrthoDB 1 1.010 - - D411229at2759
OrthoFinder 1 1.000 - - FOG0002716
OrthoInspector 1 1.000 - - otm48652
Panther 1 1.100 - - LDO PTHR12947
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1584
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

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