DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MRE11 and mre11

DIOPT Version :10

Sequence 1:NP_001427389.1 Gene:MRE11 / 4361 HGNCID:7230 Length:725 Species:Homo sapiens
Sequence 2:NP_592935.1 Gene:mre11 / 2542757 PomBaseID:SPAC13C5.07 Length:649 Species:Schizosaccharomyces pombe


Alignment Length:685 Identity:259/685 - (37%)
Similarity:383/685 - (55%) Gaps:66/685 - (9%)


- Green bases have known domain annotations that are detailed below.


Human     7 LDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKT 71
            |.:|||.:||:::|.|:|:.|||.|||||:||:.:|||.:|:|.:||.||||||:||:||||||.
pombe    12 LHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKA 76

Human    72 LHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGAD 136
            |:..|..||..|:||:|.:.|:|||.|:..|.:....:||.|.|:|::|||||||||||||:|..
pombe    77 LYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDG 141

Human   137 ALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMFVNKKVTML 201
            ...|||||...|.||:|||....:.|.:||:|||||.||:||||:.::.|||||..|...||..|
pombe   142 RYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFL 206

Human   202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLFYISQP 266
            ||....:.||||..:|||.|.|..|:::||.|:.||.|.|:|||||||.|..:.|..|.|.:.||
pombe   207 RPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQP 271

Human   267 GSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQA 331
            ||::.|||||||...||.|:|.|.|:..::.||.|.|||.|.|:||:|:....|  |...:..:.
pombe   272 GSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSI--PPMVENKKE 334

Human   332 IQSFCLEKIEEMLENAER---ERLG-----NSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDR 388
            :.::.:.|:||.:..|..   |..|     .:.:|..||:||||||:||::..:..|||.:||.|
pombe   335 VLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGR 399

Human   389 VANPKDIIHFFRHREQKEKTGEEINFGKLITKPSEG---TTLRVEDLVKQYFQTAEKNVQLSLLT 450
            |||..|::.|:.   :|:.|..:.|.| |.|...|.   .:||||.||.:|.:|.    :|..|.
pombe   400 VANATDVVQFYL---KKKYTRSKRNDG-LYTSAVEDIKINSLRVESLVNEYLKTN----RLECLP 456

Human   451 ERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLKERHIDALEDKIDEEVR-------RFRETR 508
            |..:||||..||:|:::|||:|.|:.||.|....|.::.:  .|:.:::|:.       :...|:
pombe   457 EDSLGEAVVNFVEKDDRDAIKECVETQLNKQINLLVKKRV--TEENLEQEISSIINDLPKISTTK 519

Human   509 QKNTNEEDDEVREAMTRARALRSQSEESASAFSADDLMSIDLAE-QMANDSDDSISAATNKGRGR 572
            :|:..|..:||.|............:.::|.......::...:| :|......::...|||.|  
pombe   520 RKDYEELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRR-- 582

Human   573 GRGRRGGRGQNSASRGGSQRGRADTGLETSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTT 637
                                     .|.:|...:|::|. ..|:.:..:.|.|.::.....:..|
pombe   583 -------------------------ELPSSLTKKNTRTP-QRSKEVKKVPARKLSQSTKKSDKNT 621

Human   638 KNYSEVIEVDESDVEEDIFPTTSKTDQRKGDLLED 672
            :  |.::..|.|...|     ....|....::|:|
pombe   622 Q--STLLFYDPSSTTE-----AQYLDNEDDEILDD 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MRE11NP_001427389.1 None
mre11NP_592935.1 mre11 15..414 CDD:273153 194/403 (48%)

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