DRSC/TRiP Functional Genomics Resources

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Protein Alignment hdc and heca

DIOPT Version :9

Sequence 1:NP_788768.1 Gene:hdc / 43604 FlyBaseID:FBgn0010113 Length:1080 Species:Drosophila melanogaster
Sequence 2:NP_001038591.1 Gene:heca / 567088 ZFINID:ZDB-GENE-041001-173 Length:523 Species:Danio rerio


Alignment Length:674 Identity:195/674 - (28%)
Similarity:271/674 - (40%) Gaps:210/674 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RRNSNISSSGNSTQQQHQQQLQQQHQTQQHQLLQFYAENVNSSGVLMAPMQGTGG-----VGGVG 63
            :||...:|||:..:                       ...::|||       |||     .|...
Zfish    10 KRNKRTNSSGDEQE-----------------------NGASASGV-------TGGTASTLTGATA 44

  Fly    64 GGGMVHCCLPSGDCRK--------LDTLIHLNELSLADCIRVLCNNENCSAGQYMHRECFEWWEA 120
            |        |..|.|.        :.:|....:|...|..||:||:|.|..|.:||.:||..||:
Zfish    45 G--------PPSDNRSEAPCATPLVCSLGRPVDLEKDDYQRVVCNSELCPYGNWMHLQCFYEWES 101

  Fly   121 SVLQALKANGRARSWSERQRLQHLWTKKGYELVQKACSCKCGRGQLRKDLDWVPPSSQGVIYLNG 185
            |:|......||||||:|:|..|::||||||:|..:.|||:||:|.|:||.||......       
Zfish   102 SILVQFNCIGRARSWNEKQCRQNMWTKKGYDLAFRFCSCRCGQGHLKKDTDWYQVKRM------- 159

  Fly   186 SGNRPTLANGSLSEDDDKKKAKKKRNRNNNNNNGGG-------GGGGAGVNGNTKTPLSNNNGNS 243
                         :|:.|||..:|         |.|       |||..|.......|        
Zfish   160 -------------QDERKKKMPEK---------GSGKLSSMACGGGACGGPETADEP-------- 194

  Fly   244 YAGLTPNPNVGVIGSGLPHNNGNTASNGSSGNNGSSGVLQTSALATFSNILNTNNVLGLDLRARA 308
                               ..|.:.::....:.|||..|.....|.:.|...         |..|
Zfish   195 -------------------KKGKSPASHKLAHRGSSQELSRRQSADWQNCQE---------RCHA 231

  Fly   309 GSLS-----SSGAGSGSTSPSDSQSSGEISVSPVQQLLPQQQQQQQQSLLIQPLGPAFGSNLLQN 368
            |.|:     |.|..|...||:.|..||..|.||                  ||||....|..|..
Zfish   232 GPLNAVGGMSHGLRSPCESPAQSPPSGFSSFSP------------------QPLGGPRSSRHLGE 278

  Fly   369 GLGLSKNLLIAPQQQQQQQ---------LQQQQQQQNNLPALANISNFKPLASYEQQQLVQQQKN 424
            .|   ||.:.....::..|         |.:|......||.|.|     |:.             
Zfish   279 FL---KNAVHTEGHKKHFQAGGLVGRGALLEQGAANMCLPRLDN-----PVQ------------- 322

  Fly   425 KEVELYSDRVRSTSGCNGIFSRRLDFSS-FNLLPKTRLNSYQVKIEDEGNHG-NDETRLFILSSL 487
                               |.||||.|. ...:|:.:||:|.|::||:...| .::.|.||||:|
Zfish   323 -------------------FLRRLDLSELLTHIPRHKLNTYHVRMEDDAQAGQGEDLRKFILSAL 368

  Fly   488 AQSQMSRVACILCEEPLLVFDRYPLVDGSFFLSPKQHSSGCIEVKY------EGRTLYLTCVCMS 546
            :.|..:.|.|.||...|.:|:::|||||:.||||.:|.    |::|      :||.::|..:|:.
Zfish   369 SASHRNVVNCALCHHTLPIFEQFPLVDGTLFLSPSRHD----EIEYDVPCHLQGRLMHLYAICVD 429

  Fly   547 CLDGTSSSRAINCRFCKEPWDGSSLVLGTMYAYDIFAAMPCCAERFKCNNCFKMLMHPQQRLSFY 611
            ||:|.   ..|.|..||..||||...|||||.|||.||.|||..|..|.:|.|.::..:..:.::
Zfish   430 CLEGV---HKIVCIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVIDVRVGMQYF 491

  Fly   612 SDYSHGVTCPYCNTQDTHFVKPLT 635
            |:||:...||:|...|.|||||.:
Zfish   492 SEYSNVQQCPHCGNLDYHFVKPFS 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hdcNP_788768.1 HECA 69..172 CDD:291998 46/110 (42%)
Headcase 444..634 CDD:292621 82/197 (42%)
hecaNP_001038591.1 HECA 55..153 CDD:291998 43/97 (44%)
Headcase 323..514 CDD:292621 82/197 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592037
Domainoid 1 1.000 162 1.000 Domainoid score I3961
eggNOG 1 0.900 - - E1_KOG3816
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 221 1.000 Inparanoid score I3525
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0008043
OrthoInspector 1 1.000 - - oto40351
orthoMCL 1 0.900 - - OOG6_109261
Panther 1 1.100 - - LDO PTHR13425
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3611
SonicParanoid 1 1.000 - - X6000
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.780

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