DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hdc and heca

DIOPT Version :9

Sequence 1:NP_788768.1 Gene:hdc / 43604 FlyBaseID:FBgn0010113 Length:1080 Species:Drosophila melanogaster
Sequence 2:XP_012818006.1 Gene:heca / 100038125 XenbaseID:XB-GENE-492753 Length:523 Species:Xenopus tropicalis


Alignment Length:642 Identity:184/642 - (28%)
Similarity:268/642 - (41%) Gaps:186/642 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 ENVNSSG-------VLMAPMQGTGGV---GGVGGGGMVHC---------CLPSGDCRKLDT---- 82
            :..||||       :..|...|.|.|   ||.|...:|:.         ..||.| .|.||    
 Frog    13 KRANSSGDEQENGALACAGAAGGGMVAASGGAGAAAVVNATSAAFSQASTAPSCD-SKNDTACAT 76

  Fly    83 --LIHLN---ELSLADCIRVLCNNENCSAGQYMHRECFEWWEASVLQALKANGRARSWSERQRLQ 142
              :..|.   :|...|..:|:||||:|....:||.:||..||:|:|......||||||:|:|..|
 Frog    77 PLICSLGRPVDLEKDDYQKVICNNEHCPYSTWMHLQCFYEWESSILVQFNCIGRARSWNEKQCRQ 141

  Fly   143 HLWTKKGYELVQKACSCKCGRGQLRKDLDWVPPSSQGVIYLNGSGNRPTLANGSLSEDDDKKKAK 207
            ::||||||:|..:.|||:||:|.|:||.||......                    :|:.|||:.
 Frog   142 NMWTKKGYDLAFRFCSCRCGQGHLKKDTDWYQVKRM--------------------QDEKKKKSA 186

  Fly   208 KKRNRNNNNNNGGGGGGGAGVNGNTKTPLSNNNGNSYAGLTPNPNVGVIGSGLPHNNGNTASNGS 272
                                    |:.|.                            |.:.|..|
 Frog   187 ------------------------TEKPC----------------------------GRSTSESS 199

  Fly   273 SGNNGSSGVLQTSALATFSNILNTNNVLGLDLRAR------AGSLSSSGAGSGS-----TSPSDS 326
            .......|.:::....||            ||..|      .....|.|.||.|     .||..|
 Frog   200 DDIKKCRGTVKSQKGLTF------------DLPRRHSVDRQNSQEKSIGGGSHSLRSPCVSPGQS 252

  Fly   327 QSSGEISVSPVQQLLPQQQQQQQQSLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQ 391
            ..:|...:||....:|:..:.         ||     ..|:|.:.|                   
 Frog   253 PPAGYPVLSPSHFNVPRSSRY---------LG-----EFLKNAVHL------------------- 284

  Fly   392 QQQQNNLPALANISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDFSSFNL- 455
            :..:.:|.....|.|     |:....:...|.::.:.|.:. |:        |.||||.|.... 
 Frog   285 EPHKKSLATSGAIRN-----SHYDCSMPGLQTHRSMRLDAP-VQ--------FLRRLDLSELLAH 335

  Fly   456 LPKTRLNSYQVKIEDEGNHG-NDETRLFILSSLAQSQMSRVACILCEEPLLVFDRYPLVDGSFFL 519
            :|:.:||::.|::||:...| .::.|.||||:|:.|..:.|.|.||...|.||:::|||||:.||
 Frog   336 IPRHKLNTFHVRMEDDAQVGQGEDLRKFILSALSASYRNVVNCALCHRTLPVFEQFPLVDGTLFL 400

  Fly   520 SPKQHSSGCIEVKY------EGRTLYLTCVCMSCLDGTSSSRAINCRFCKEPWDGSSLVLGTMYA 578
            ||.:|.    |::|      :||.::|..:|:.||:|.   ..|.|..||..||||...|||||.
 Frog   401 SPSRHD----EIEYDVPCHLQGRLMHLYALCVDCLEGV---HKIICIKCKSLWDGSWHQLGTMYT 458

  Fly   579 YDIFAAMPCCAERFKCNNCFKMLMHPQQRLSFYSDYSHGVTCPYCNTQDTHFVKPLT 635
            |||.||.|||..|..|.:|.|.::..:..:.::|:||:...||:|...|.|||||.:
 Frog   459 YDILAASPCCQARLNCKHCGKPVIDVRIGMQYFSEYSNVQQCPHCGNLDYHFVKPFS 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hdcNP_788768.1 HECA 69..172 CDD:291998 48/120 (40%)
Headcase 444..634 CDD:292621 82/197 (42%)
hecaXP_012818006.1 HECA 73..171 CDD:373778 42/97 (43%)
SPX 203..>362 CDD:367336 43/217 (20%)
Headcase 319..514 CDD:374285 83/210 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13425
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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