DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mlc2 and Efcab11

DIOPT Version :9

Sequence 1:NP_524586.1 Gene:Mlc2 / 43587 FlyBaseID:FBgn0002773 Length:222 Species:Drosophila melanogaster
Sequence 2:NP_001019521.1 Gene:Efcab11 / 500705 RGDID:1565006 Length:162 Species:Rattus norvegicus


Alignment Length:162 Identity:37/162 - (22%)
Similarity:54/162 - (33%) Gaps:49/162 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDLRAAFDSV-GKIANDKELDAML 120
            |:|  .|||.     .|..:..::.|.|:..|.|..|.:.:.|.:.|...: |...:..|.||::
  Rat     7 GAR--PRAGE-----ISASERRKWVEVFKACDEDNKGYLSREDFKVAIVMLFGYKPSKIEADAVM 64

  Fly   121 GEAS---------GPINFTQ-------------------------LLTL--FANRMATSGANDED 149
            ..|:         |.:|..|                         .|||  |....:........
  Rat    65 SSANPDTSGVSLEGFLNVVQRKKEAQLYRNEIRHIFTAFDVHYRGFLTLEDFKRAFSQVAPKLPS 129

  Fly   150 EVVIAAFKTFDNDGLIDGD-KFR--EMLMNFG 178
            ..|:..|:..|.|.  ||. .||  |..||.|
  Rat   130 RTVLEVFREADQDS--DGHVSFRDFEYAMNHG 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mlc2NP_524586.1 PTZ00184 73..213 CDD:185504 32/146 (22%)
Efcab11NP_001019521.1 EFh 25..84 CDD:298682 14/58 (24%)
EF-hand_7 25..83 CDD:290234 14/57 (25%)
EFh 95..152 CDD:238008 12/58 (21%)
EF-hand_7 96..156 CDD:290234 13/61 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1435392at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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