DRSC/TRiP Functional Genomics Resources

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Protein Alignment spn-A and DMC1

DIOPT Version :9

Sequence 1:NP_524583.1 Gene:spn-A / 43577 FlyBaseID:FBgn0003479 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_011106.1 Gene:DMC1 / 856926 SGDID:S000000981 Length:334 Species:Saccharomyces cerevisiae


Alignment Length:319 Identity:157/319 - (49%)
Similarity:209/319 - (65%) Gaps:4/319 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LSVTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFL 84
            |||.:|....|.|.|::.|:...::||.:|.:.|::.|..|.||...|||:|...|.|::.:||:
Yeast    17 LSVDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQVGFI 81

  Fly    85 SARTFYQMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149
            .|.....:|..|..||||||:||.:|||||.|.||||:||||||||||:.|||.||.|||....|
Yeast    82 PATVQLDIRQRVYSLSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGG 146

  Fly   150 GEGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYA 214
            ||||..|||||.||||||:..||:.|:|:....|.||::.||.||:.|.:|::.....|....|.
Yeast   147 GEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDYR 211

  Fly   215 LLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGAPGMF-- 277
            |::|||.||.:|.||.|||||:.||..|...|..|.|||:||.|||.:||||.:. .||..:|  
Yeast   212 LIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVFLTNQVQSD-PGASALFAS 275

  Fly   278 -DAKKPIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPCLPESEAMFAILPDGIGDARE 335
             |.:||||||::||:|.||:.||||:|:.|:.|:.|||.:||.|.::.|...||.|:.:
Yeast   276 ADGRKPIGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPEKECVYVIGEKGITDSSD 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spn-ANP_524583.1 recomb_RAD51 22..335 CDD:274048 155/315 (49%)
HHH_5 30..77 CDD:291205 17/46 (37%)
Rad51_DMC1_radA 99..331 CDD:238543 128/234 (55%)
DMC1NP_011106.1 recomb_DMC1 19..332 CDD:131292 154/313 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0468
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62165
OrthoFinder 1 1.000 - - FOG0001571
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100483
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.720

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