DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-delta and zgc:136308

DIOPT Version :9

Sequence 1:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001038712.1 Gene:zgc:136308 / 692274 ZFINID:ZDB-GENE-060512-206 Length:320 Species:Danio rerio


Alignment Length:277 Identity:73/277 - (26%)
Similarity:112/277 - (40%) Gaps:53/277 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 KSSDGEDRPTKKRVKQECTTCGKVYNSWYQLQKHISEEHSKQPNHICPICGVIRRDEEYLELHMN 243
            :.:|...|..|:||  .||.|||...:...|.||:.....|:| ..|..||....:::.|..||.
Zfish    12 EKTDSLKRKDKERV--TCTQCGKSLANKRSLGKHMRIHTGKKP-CTCTQCGKSLANKQSLGCHMR 73

  Fly   244 LHEGKTEKQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLRHEAEENPI 308
            :|..:....|..|.|||....|.:.||.:|...|.::|::||..|.:.:.|.:| ||...:|.|.
Zfish    74 VHTREKPFTCSQCGKSFGHLSNLISHMLIHNGDKTHKCDQCGKTFLRGSDLKSH-LRVHTKERPY 137

  Fly   309 ICSICNVSFK----------------------SRKTF------NHHTLIHKENRPRHYCSVCPKS 345
            .||:|..||:                      .:|||      ..|..||...:| :.||:|.|.
Zfish   138 PCSVCEKSFRHQVSLRNHQKTHTGVGEYRCLECKKTFITAENLKIHERIHTGEKP-YICSLCNKR 201

  Fly   346 FTERYTLKMHMKTHEGDVVYGV----REEAPADEQQVVEELHVDVDESEAAVTVIMSDNDENSGF 406
            |::...:|.|.:.|.|:..|..    :..:.....:..|.:|                ..|....
Zfish   202 FSQFAQMKSHERVHTGEKPYKCSHCDKRVSDLGNLRKHERIH----------------TGEKPYM 250

  Fly   407 CLICNTNFENKKELEHH 423
            |..|:|.|.:...|:.|
Zfish   251 CSHCDTRFSDLGTLKRH 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 51/182 (28%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
C2H2 Zn finger 253..273 CDD:275368 8/19 (42%)
C2H2 Zn finger 281..301 CDD:275368 7/19 (37%)
C2H2 Zn finger 310..327 CDD:275370 8/44 (18%)
zf-C2H2 337..359 CDD:278523 7/21 (33%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
zgc:136308NP_001038712.1 C2H2 Zn finger 27..47 CDD:275368 8/19 (42%)
C2H2 Zn finger 55..75 CDD:275368 6/19 (32%)
COG5048 <60..307 CDD:227381 55/226 (24%)
C2H2 Zn finger 83..103 CDD:275368 8/19 (42%)
C2H2 Zn finger 111..131 CDD:275368 8/20 (40%)
zf-H2C2_2 123..148 CDD:290200 11/25 (44%)
C2H2 Zn finger 139..159 CDD:275368 5/19 (26%)
C2H2 Zn finger 167..187 CDD:275368 4/19 (21%)
C2H2 Zn finger 195..215 CDD:275368 7/19 (37%)
C2H2 Zn finger 223..243 CDD:275368 1/19 (5%)
zf-H2C2_2 235..259 CDD:290200 6/39 (15%)
C2H2 Zn finger 251..271 CDD:275368 6/17 (35%)
zf-H2C2_2 264..288 CDD:290200 2/4 (50%)
C2H2 Zn finger 279..299 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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