DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sry-delta and CG30020

DIOPT Version :9

Sequence 1:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster


Alignment Length:415 Identity:92/415 - (22%)
Similarity:133/415 - (32%) Gaps:141/415 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 CPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVPESGEDI----------LVEEV---- 111
            ||||.:..:...|:..:|.  :..|...:     .|.:.|..||.|          :.|.|    
  Fly   861 CPRCIRSFAAKTTLSRHLQ--RSHLVDTI-----IEMQTPHCGEAITTTMATSSSTISEPVNSVT 918

  Fly   112 ------EIPQSDV----ETDADAEADALFVELVKDQEESDTE----IKREFVDEEEEEDD----- 157
                  |:.|:||    .|:|....|.        .||..|:    :|.|....|||.|.     
  Fly   919 VDGQHNEMMQTDVGAEKMTEALGNGDG--------NEEGGTDDGTGVKAEPAVPEEELDPVTLDA 975

  Fly   158 -----------------------------------------------DDD---DEFICEDVDVGD 172
                                                           |.|   ||......::.|
  Fly   976 ATAVTTTAIAAAISAAAAATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSPNIHD 1040

  Fly   173 -SEALYGKSSDG---------------EDRPTK-----KRVKQE----CTTCGKVYNSWYQLQKH 212
             |:||...:|..               |..|.|     .|:.:.    |..|.:.::...:|.||
  Fly  1041 VSKALSDNASSSCPINESYKLLSTTALETSPAKGLRSNSRLHRSSIHICKLCNQTFDELGKLVKH 1105

  Fly   213 ISEEHSKQP------NHICPICGVIRRDEEYLELHMNLHEGKTEKQCRYCPKSFSRPVNTLRHMR 271
            ..|.||...      .|.|.||....|....|:.||..|..: :.||:.|||||.......||.:
  Fly  1106 EMELHSNTERSRWGYQHKCAICNTSYRTLTLLKFHMKRHSNR-KSQCKLCPKSFVTIAELERHTK 1169

  Fly   272 -MHWDKKKYQC--EKCGLRFSQDNLLYNHRLRHEAEEN---PIICSICNVSFKSRKTFNHHTLIH 330
             .|...|..:|  :.|...|:    ..:|.:||:...:   ..||.:||...||.....:|..:|
  Fly  1170 AKHSKDKTLRCFMDGCRKTFA----FKHHLIRHQKASHLSTRYICPVCNKEEKSNVHLKNHMSVH 1230

  Fly   331 KENRPRHYCSVCPKSFTERYTLKMH 355
            | ....:.|..|.:|:..|..|..|
  Fly  1231 K-GEITYKCPKCDRSYLRRGRLVTH 1254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 47/163 (29%)
C2H2 Zn finger 225..245 CDD:275368 7/19 (37%)
C2H2 Zn finger 253..273 CDD:275368 8/20 (40%)
C2H2 Zn finger 281..301 CDD:275368 4/21 (19%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
zf-C2H2 337..359 CDD:278523 6/19 (32%)
C2H2 Zn finger 339..359 CDD:275368 6/17 (35%)
CG30020NP_610627.2 zf-AD 25..106 CDD:285071
C2H2 Zn finger 369..389 CDD:275368
C2H2 Zn finger 397..418 CDD:275368
C2H2 Zn finger 442..460 CDD:275368
C2H2 Zn finger 730..750 CDD:275368
C2H2 Zn finger 758..777 CDD:275368
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 7/19 (37%)
C2H2 Zn finger 1151..1172 CDD:275368 8/20 (40%)
C2H2 Zn finger 1180..1203 CDD:275368 6/26 (23%)
C2H2 Zn finger 1210..1230 CDD:275368 6/19 (32%)
C2H2 Zn finger 1238..1254 CDD:275368 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440001
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.