DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-delta and LOC100365363

DIOPT Version :9

Sequence 1:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster
Sequence 2:XP_006228060.2 Gene:LOC100365363 / 100365363 RGDID:2319215 Length:670 Species:Rattus norvegicus


Alignment Length:278 Identity:71/278 - (25%)
Similarity:114/278 - (41%) Gaps:48/278 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 SEALYGKSSDGEDRPTKKRVKQECTTCGKVYNSWYQLQKHISEEHSKQPNHICPICGVIRRDEEY 237
            |..::.::..|| :|.:      |..||||::|...|..| ...|:.:..:.|..||.:.....:
  Rat   272 SLTIHRRTHTGE-KPYR------CNECGKVFSSHSNLNTH-QAIHTGEKPYKCSECGKVFTQNSH 328

  Fly   238 LELHMNLHEGKTEKQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLRHE 302
            |..|...|.|:...:|..|.|:||...:...|:.:|..:|.|:||:||..|:|::.|.|||..|.
  Rat   329 LANHWRTHTGEKPYKCNECGKAFSVYSSLTTHLAIHTGEKPYKCEECGKVFTQNSHLANHRGIHS 393

  Fly   303 AE---------------------------ENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCS 340
            .|                           |.|..||.|..:|..|.:...|.:||...:| :.|:
  Rat   394 GEKPYKCEECGKHFNQTSNLARHWRVHTGEKPYKCSECGKAFSVRSSLTSHQVIHTGEKP-YKCA 457

  Fly   341 VCPKSFTERYTLKMHMKTHEGDVVYGVREEAPADEQQVVEELHVDVDESEAAVTVIMSDNDENSG 405
            .|.|.|::..:|.:|.:.|.|:..|...|...|...      |.:::..:...|      .:...
  Rat   458 ECGKVFSQTSSLSIHQRIHTGEKPYRCNECGKAFNS------HSNLNTHQVIHT------GQKPY 510

  Fly   406 FCLICNTNFENKKELEHH 423
            .||.|...|.....|.:|
  Rat   511 KCLECGKVFTQNSHLANH 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 49/181 (27%)
C2H2 Zn finger 225..245 CDD:275368 5/19 (26%)
C2H2 Zn finger 253..273 CDD:275368 6/19 (32%)
C2H2 Zn finger 281..301 CDD:275368 10/19 (53%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
zf-C2H2 337..359 CDD:278523 6/21 (29%)
C2H2 Zn finger 339..359 CDD:275368 6/19 (32%)
LOC100365363XP_006228060.2 KRAB 8..68 CDD:214630
SFP1 <143..221 CDD:227516
C2H2 Zn finger 148..168 CDD:275368
C2H2 Zn finger 176..196 CDD:275368
COG5048 200..575 CDD:227381 71/278 (26%)
C2H2 Zn finger 204..224 CDD:275368
C2H2 Zn finger 232..252 CDD:275368
C2H2 Zn finger 260..280 CDD:275368 1/7 (14%)
C2H2 Zn finger 288..308 CDD:275368 8/20 (40%)
C2H2 Zn finger 316..336 CDD:275368 5/19 (26%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
C2H2 Zn finger 372..392 CDD:275368 10/19 (53%)
C2H2 Zn finger 400..420 CDD:275368 0/19 (0%)
C2H2 Zn finger 428..448 CDD:275368 6/19 (32%)
C2H2 Zn finger 456..476 CDD:275368 6/19 (32%)
C2H2 Zn finger 484..504 CDD:275368 3/25 (12%)
C2H2 Zn finger 512..532 CDD:275368 6/17 (35%)
C2H2 Zn finger 540..560 CDD:275368
C2H2 Zn finger 568..588 CDD:275368
zf-H2C2_2 580..604 CDD:404364
C2H2 Zn finger 596..615 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335934
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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