DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-delta and si:ch211-161m3.6

DIOPT Version :9

Sequence 1:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster
Sequence 2:NP_001314790.1 Gene:si:ch211-161m3.6 / 100005838 ZFINID:ZDB-GENE-161017-36 Length:295 Species:Danio rerio


Alignment Length:282 Identity:84/282 - (29%)
Similarity:130/282 - (46%) Gaps:37/282 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 VPESGEDILVEEVEIPQSDVETDADAEADALFVELVKDQEESDTEIKREFVDEEEEEDDDDDDEF 163
            :.|..|||..|:|.|.:.:   ||:...|.|.|     :|||      :.:||.||:...::.:.
Zfish     4 IKEECEDIKTEDVFIVKME---DAEEHTDPLPV-----KEES------QELDEVEEKGPFENYQH 54

  Fly   164 ICEDVDVGDSEALYGKSSDGEDRPTKKRVKQE--------CTTCGKVYNSWYQLQKHISEEHSKQ 220
            .     |...::.:...:   ||.:.:...||        |..|||.:.....|.:|: ..|:.:
Zfish    55 F-----VTGGQSFHRART---DRTSSQEKVQEIDPISYFICFQCGKGFTQKGSLNRHM-RTHTGE 110

  Fly   221 PNHICPICGVIRRDEEYLELHMNLHEGKTEKQCRYCPKSFSRPVNTLRHMRMHWDKKKYQCEKCG 285
            ..:.||:||........||:||.:|.|:|...|:.|.|||||..|...|||:|..:..:.|::||
Zfish   111 KPYSCPLCGKSFNQHGNLEVHMGVHSGETPFACQQCGKSFSRKGNLRYHMRVHTGECPFTCQQCG 175

  Fly   286 LRFSQDNLLYNHRLRHEAEENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCSVCPKSFTERY 350
            :.|:....|..| :|....|.|..||.|..||:...:...|...|...:| :.|..|.|||.:..
Zfish   176 ISFTAKGSLTRH-MRIHTGERPYTCSECGESFEQHGSLKVHMRTHTGEKP-YTCQQCGKSFDQHG 238

  Fly   351 TLKMHMKTHEGDVVYGVREEAP 372
            .||:|::.|.|:..|    |.|
Zfish   239 NLKVHLRIHTGEKPY----ECP 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 51/154 (33%)
C2H2 Zn finger 225..245 CDD:275368 8/19 (42%)
C2H2 Zn finger 253..273 CDD:275368 11/19 (58%)
C2H2 Zn finger 281..301 CDD:275368 6/19 (32%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
zf-C2H2 337..359 CDD:278523 8/21 (38%)
C2H2 Zn finger 339..359 CDD:275368 8/19 (42%)
si:ch211-161m3.6NP_001314790.1 COG5048 <65..234 CDD:227381 54/174 (31%)
zf-C2H2 85..107 CDD:278523 6/22 (27%)
C2H2 Zn finger 87..107 CDD:275368 6/20 (30%)
zf-H2C2_2 99..124 CDD:290200 7/25 (28%)
C2H2 Zn finger 115..135 CDD:275368 8/19 (42%)
zf-H2C2_2 127..152 CDD:290200 12/24 (50%)
C2H2 Zn finger 143..163 CDD:275368 11/19 (58%)
zf-H2C2_2 155..179 CDD:290200 8/23 (35%)
C2H2 Zn finger 171..191 CDD:275368 7/20 (35%)
zf-H2C2_2 183..208 CDD:290200 10/25 (40%)
C2H2 Zn finger 199..219 CDD:275368 6/19 (32%)
zf-H2C2_2 211..236 CDD:290200 8/25 (32%)
C2H2 Zn finger 227..247 CDD:275368 8/19 (42%)
zf-H2C2_2 239..264 CDD:290200 8/22 (36%)
C2H2 Zn finger 255..271 CDD:275368 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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