DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and znf1059

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_001121721.2 Gene:znf1059 / 563440 ZFINID:ZDB-GENE-030131-8437 Length:390 Species:Danio rerio


Alignment Length:250 Identity:71/250 - (28%)
Similarity:104/250 - (41%) Gaps:35/250 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LKEPERQPGEEDECEEFMKEEMLDEEFQFSEPDDS--MPSSEEEFFTETTEIPCHICGEMFSSQE 184
            ||...:|..|.:|.:...::|:.||:...:|...|  .|.:.:    ......|..||..||.:.
Zfish    33 LKTETQQWNEMEEKQFEKQQEITDEKPTLTEKTSSHGRPRNSK----SACNFTCRQCGNRFSRKH 93

  Fly   185 VLERHI------KADTCQKSEQA--------------------TCNVCGLKVKDDEVLDLHMNLH 223
            .|:.|:      |..|||:..|.                    :|:.||...|....|.:||..|
Zfish    94 NLQVHMRIHSGEKPYTCQQCGQCFCTSGNLVVHMRIHTGEKPYSCSQCGKSFKQISNLKVHMRTH 158

  Fly   224 EGKTELECRYCDKKFSHKRNVLRHMEVHWDKKKYQCDKCGERFSLSWLMYNHLMRHDAEENALIC 288
            .|:...||:.|.::|....|..:||.:|.....|.|.:||:.|..|..:..|:..|.. |....|
Zfish   159 TGERPYECQQCGQRFYTTGNFAQHMRIHTGVGLYPCLQCGKSFHQSANLVAHMRIHTG-ERPYSC 222

  Fly   289 EVCHQQFKTKRTYKHHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVHQPVEKP 343
            ..|.:.||.....:.|:|.|...| .:.|..|.|||..|..|::|.|||.. |||
Zfish   223 IQCGKSFKQNSNLEAHMRIHTGGR-IFTCTQCGKSFAQKQDLEIHIRVHTG-EKP 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 7/19 (37%)
C2H2 Zn finger 231..251 CDD:275368 6/19 (32%)
C2H2 Zn finger 259..308 CDD:275368 14/48 (29%)
C2H2 Zn finger 288..303 CDD:275370 4/14 (29%)
zf-C2H2 315..337 CDD:278523 9/21 (43%)
C2H2 Zn finger 317..337 CDD:275368 9/19 (47%)
znf1059NP_001121721.2 COG5048 <58..322 CDD:227381 62/224 (28%)
C2H2 Zn finger 82..102 CDD:275368 7/19 (37%)
zf-H2C2_2 94..117 CDD:290200 7/22 (32%)
C2H2 Zn finger 110..130 CDD:275368 3/19 (16%)
zf-H2C2_2 122..147 CDD:290200 3/24 (13%)
C2H2 Zn finger 138..158 CDD:275368 7/19 (37%)
zf-H2C2_2 150..175 CDD:290200 9/24 (38%)
C2H2 Zn finger 166..186 CDD:275368 6/19 (32%)
zf-H2C2_2 206..231 CDD:290200 6/25 (24%)
C2H2 Zn finger 222..242 CDD:275368 6/19 (32%)
zf-H2C2_2 234..259 CDD:290200 9/25 (36%)
C2H2 Zn finger 250..270 CDD:275368 9/19 (47%)
zf-H2C2_2 262..287 CDD:290200 7/14 (50%)
C2H2 Zn finger 278..298 CDD:275368
zf-H2C2_2 291..315 CDD:290200
C2H2 Zn finger 306..326 CDD:275368
C2H2 Zn finger 334..354 CDD:275368
C2H2 Zn finger 362..382 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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