DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sry-beta and si:dkey-262g12.9

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:XP_021331485.1 Gene:si:dkey-262g12.9 / 555910 ZFINID:ZDB-GENE-161017-28 Length:380 Species:Danio rerio


Alignment Length:252 Identity:68/252 - (26%)
Similarity:107/252 - (42%) Gaps:37/252 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LKEPERQPGEEDECEEFMK-EEMLDEEFQFSEPDDSMPSSEEEFFTETTEIPCHICGEMFSSQEV 185
            :||...:..|.:|.::|.| :|::.||.. :|...:.|....:.........|...|..|:.:..
Zfish    32 MKEESEELNETEEKDQFEKHQELMTEEIS-AETKKASPHKRAQKTKSDGNFTCSQGGMSFTQKNN 95

  Fly   186 LERHIKADTCQKSEQA--TCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHM 248
            |..|:.|    :||:.  .|..||...:...:|.:||.:|.|:....|..|.|.|:.::|:..|.
Zfish    96 LVDHMSA----RSEEKPYPCPECGKGFRKKHILAVHMRVHTGEKPFSCDLCGKSFNLQKNMKIHR 156

  Fly   249 EVHWDKKKYQCDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRTYKHHLRTHQTDRP 313
            .:|..::.|.|.:||:||....::.||:..|.. |....|..|...|..|:..:.|:..|.|:||
Zfish   157 RIHTGERPYACQQCGKRFRQIQILKNHIKLHTG-ERPYACAQCGMSFIQKQKLEAHMAVHNTERP 220

  Fly   314 ---------------------------RYPCPDCEKSFVDKYTLKVHKRVHQPVEKP 343
                                       .:.|..|.|||..:..||||.|||.. |||
Zfish   221 FACHQCGGNFAHKDYLTIHMKIHSGEKPFACQQCGKSFNRRQCLKVHMRVHTG-EKP 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 6/19 (32%)
C2H2 Zn finger 231..251 CDD:275368 6/19 (32%)
C2H2 Zn finger 259..308 CDD:275368 14/48 (29%)
C2H2 Zn finger 288..303 CDD:275370 4/14 (29%)
zf-C2H2 315..337 CDD:278523 10/21 (48%)
C2H2 Zn finger 317..337 CDD:275368 10/19 (53%)
si:dkey-262g12.9XP_021331485.1 COG5048 <75..263 CDD:227381 47/192 (24%)
C2H2 Zn finger 83..103 CDD:275368 6/23 (26%)
C2H2 Zn finger 111..131 CDD:275368 6/19 (32%)
C2H2 Zn finger 139..159 CDD:275368 6/19 (32%)
C2H2 Zn finger 167..187 CDD:275368 7/19 (37%)
C2H2 Zn finger 195..215 CDD:275368 5/19 (26%)
COG5048 216..>328 CDD:227381 18/62 (29%)
C2H2 Zn finger 223..243 CDD:275368 0/19 (0%)
C2H2 Zn finger 251..271 CDD:275368 10/19 (53%)
C2H2 Zn finger 279..299 CDD:275368
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.