DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and CG8319

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_649920.2 Gene:CG8319 / 41165 FlyBaseID:FBgn0037722 Length:383 Species:Drosophila melanogaster


Alignment Length:410 Identity:86/410 - (20%)
Similarity:141/410 - (34%) Gaps:139/410 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CFVCG--KEKSVGVF-----QLIEGCIVPGTFKPIKDILKYFEKIINQRLELLPNSA----ACRD 61
            |.:||  .|..:|:|     :.::|..:....|...|:            :|.|:.|    .|..
  Fly     5 CRICGGASENMLGIFDDQVEEYVDGAKLAEMVKTCADV------------QLDPDDAMPQKMCIS 57

  Fly    62 CLEYLFNYDRLVRNLSQVQRQIADALLGCRQVEGKAETKQQAAKRARVQVPAF--KIVQATALKE 124
            |:.                               .|.|.....:|.......|  .|:....:|:
  Fly    58 CVH-------------------------------DARTAYGFKRRCEENYKKFYLAILNGQVIKD 91

  Fly   125 PERQPGEEDECEEFMKEEMLDEEFQFSE-PDDSMPSSEEEFFTE----------TTE-------- 170
               :|.|||              |.|.| ||.....::::...|          ||:        
  Fly    92 ---EPNEED--------------FLFIENPDKGNLEAKKKLNKEIKKTHQTASRTTKSSITTSRA 139

  Fly   171 -----------IPCHICGEMFSSQEVLERHIK----ADTCQKSEQ-------------------- 200
                       ..|.:|.:.|..|..|..|:|    :..||..|:                    
  Fly   140 GRQLRSIKNQTFKCELCIKQFKRQINLLDHMKVHSNSHVCQNCEERFLFKADLDNHQCYRNSNST 204

  Fly   201 ATCNVCGLKV-KDDEVLDLH--MNLHEGKTELECRYCDKKFSHKRNVLRHMEVHWDKKK----YQ 258
            ..|..| ||| ...:.||.|  .::.| ::..:|.:|.:.|:.::|:..|:.:|.:.|:    ::
  Fly   205 VECPEC-LKVFSSTQSLDSHKCKDMQE-RSPFQCPHCQQAFTREQNLKAHLLIHAESKQGNGPHK 267

  Fly   259 CDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRTYKHHLRTHQTDRPRYPCPDCEKS 323
            |..|...|.....:..|:..| ..|....|..|...|::|:..|.|:|.|..::| |.||.|.|:
  Fly   268 CSYCQTGFFNKSALKVHIHAH-MGERPHACPFCVSNFRSKQALKVHIRIHTGEKP-YQCPHCPKT 330

  Fly   324 FVDKYTLKVHKRVHQPVEKP 343
            |.|...|..|:|.|.. |:|
  Fly   331 FSDNNNLAKHRRRHSD-ERP 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 8/22 (36%)
C2H2 Zn finger 231..251 CDD:275368 5/19 (26%)
C2H2 Zn finger 259..308 CDD:275368 13/48 (27%)
C2H2 Zn finger 288..303 CDD:275370 4/14 (29%)
zf-C2H2 315..337 CDD:278523 10/21 (48%)
C2H2 Zn finger 317..337 CDD:275368 9/19 (47%)
CG8319NP_649920.2 zf-AD 4..79 CDD:285071 17/116 (15%)
COG5048 <153..368 CDD:227381 54/202 (27%)
C2H2 Zn finger 153..173 CDD:275368 7/19 (37%)
C2H2 Zn finger 179..196 CDD:275368 3/16 (19%)
C2H2 Zn finger 207..227 CDD:275370 8/20 (40%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
C2H2 Zn finger 268..288 CDD:275368 4/19 (21%)
C2H2 Zn finger 296..316 CDD:275368 7/19 (37%)
zf-H2C2_2 308..332 CDD:290200 10/24 (42%)
zf-C2H2 322..344 CDD:278523 10/21 (48%)
C2H2 Zn finger 324..344 CDD:275368 9/19 (47%)
C2H2 Zn finger 352..368 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449798
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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