DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and CG1024

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_001138014.2 Gene:CG1024 / 40789 FlyBaseID:FBgn0027514 Length:543 Species:Drosophila melanogaster


Alignment Length:356 Identity:71/356 - (19%)
Similarity:124/356 - (34%) Gaps:116/356 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KPIKDI--------LKYFEKII-NQRLELLPNSAACRDCLEYLFNYDRLVRNLSQVQRQIADALL 88
            |||.::        |..:|.|: .:..|::|             .||           ...||| 
  Fly   211 KPISNVSELNLDRCLNAYEDIVRKEEKEVVP-------------KYD-----------DELDAL- 250

  Fly    89 GCRQV------EGKAE-TKQQAAKRARVQV--PAFKIVQATALKEPERQPGEEDECEEFMKEEML 144
             |::.      .||.| .::|....|.:|.  ....|::..||       |:|:..:  :|:||.
  Fly   251 -CKEFFDDGPSAGKGEANEEQQQDDAHLQQGNQEVVIIEIDAL-------GKEEVAQ--LKKEMK 305

  Fly   145 DEEFQFSEPD-----DSMPSSEEEF------FTETTEIPCHICGEMFSSQEVLERHI--KAD--- 193
            .:  ..|:|.     .:.||.:.:.      .|:.....|..||:..:|.:....|:  |.|   
  Fly   306 SD--PISQPTKRRRISTTPSRDSDTEMSTNGLTKLISYLCPKCGKEIASMDGWRAHVFKKHDFEH 368

  Fly   194 -------TCQKSEQATCNVCGLKVKDDEV---LDLHMNLH-EGKTELECRYCDKKFSHKRNVLRH 247
                   ..:...:|.|..| .:|:...|   |..|...| ..::.|:|..||:..:....:|.|
  Fly   369 IIENSFKILESGRKAMCLQC-REVQPTTVRSQLQKHCFKHLPYRSYLKCTLCDRTKTSTSKILNH 432

  Fly   248 MEVHWD-----KKKYQC-----------DKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFK 296
            :..:..     |.|.|.           :|.|:.     .|.:.....|.:....:||.|.:.|:
  Fly   433 IRYNHQEELQRKNKTQLLIKPEPMWASPNKSGQA-----AMADDAGSEDDQGEQAVCEHCDRVFR 492

  Fly   297 TKRTYKHHLRTHQTDRPRYPCPDCEKSFVDK 327
            :|..|:.|:.:            |.:|...|
  Fly   493 SKWRYERHIAS------------CRRSGAGK 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 6/22 (27%)
C2H2 Zn finger 231..251 CDD:275368 5/19 (26%)
C2H2 Zn finger 259..308 CDD:275368 11/59 (19%)
C2H2 Zn finger 288..303 CDD:275370 6/14 (43%)
zf-C2H2 315..337 CDD:278523 3/13 (23%)
C2H2 Zn finger 317..337 CDD:275368 3/11 (27%)
CG1024NP_001138014.2 C2H2 Zn finger 30..51 CDD:275368
C2H2 Zn finger 73..100 CDD:275368
C2H2 Zn finger 106..123 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24409
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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