DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and CG11247

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_001097659.1 Gene:CG11247 / 40414 FlyBaseID:FBgn0037120 Length:522 Species:Drosophila melanogaster


Alignment Length:378 Identity:87/378 - (23%)
Similarity:128/378 - (33%) Gaps:112/378 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 LVRNLSQVQRQIADALLGCRQVEGKAETKQQAAKRARVQVPAFKI---------VQATALKEPER 127
            :||:...|.::.|.:||    .:.........|.|.....|...|         ::...:.|.|.
  Fly     1 MVRSRRSVSKEDAVSLL----TDSGISLSSPPAARESSPGPTLAIKRRKSSLASLRDACVDEEED 61

  Fly   128 QPGEEDECEEFMKEEMLDEEFQFSEPDDSMPSSEEEFFTETTEIPCHICGEMFSSQEVLERHI-- 190
            ..||:|..::...:..|.:..:..||            .:.....|..|.:.|..:..|:||:  
  Fly    62 DGGEQDSKDDDYVQPQLKKSARKGEP------------VKRKHHVCSQCSKEFGGKTDLQRHMLI 114

  Fly   191 -------KADTCQKS------------------EQATCNVCGLKVKDDEVLDLHMNLHEGKTELE 230
                   |...|.||                  :|..|:.|.......|.|.|||.||.|:....
  Fly   115 HSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQFVCSQCPKSFALKERLRLHMRLHSGEKPYP 179

  Fly   231 CRYCDKKFSHKRNVLRHMEVHWDK--KKYQCDKCGERFSLSWLMYNHLMRHD------------- 280
            |..|||||:....:.:||..|...  :::.|.||...||.:..:..|:.||:             
  Fly   180 CDLCDKKFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQ 244

  Fly   281 -AEENAL------------------------------------------ICEVCHQQFKTKRTYK 302
             |.|.||                                          :||||:..|..|..|.
  Fly   245 FANELALRAHINQEHHKLTQFECEICHKMIEPDEDLATHMQRHTAVKTHVCEVCNTYFTQKSQYN 309

  Fly   303 HHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVHQPVEKPESAEAKEATVTF 355
            .|:|.|..:|| |.|..|.::|.....||:|.|.|.. |||...:..|..|.|
  Fly   310 VHMRMHTGERP-YQCRICHQTFAHSSVLKLHIRKHTG-EKPFRCQLCEDEVAF 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 7/19 (37%)
C2H2 Zn finger 231..251 CDD:275368 8/19 (42%)
C2H2 Zn finger 259..308 CDD:275368 21/104 (20%)
C2H2 Zn finger 288..303 CDD:275370 7/14 (50%)
zf-C2H2 315..337 CDD:278523 8/21 (38%)
C2H2 Zn finger 317..337 CDD:275368 7/19 (37%)
CG11247NP_001097659.1 COG5048 <88..247 CDD:227381 38/158 (24%)
C2H2 Zn finger 95..115 CDD:275368 6/19 (32%)
zf-H2C2_2 107..132 CDD:290200 7/24 (29%)
C2H2 Zn finger 123..144 CDD:275368 3/20 (15%)
C2H2 Zn finger 152..172 CDD:275368 7/19 (37%)
zf-H2C2_2 165..189 CDD:290200 13/23 (57%)
C2H2 Zn finger 180..200 CDD:275368 8/19 (42%)
COG5048 <192..369 CDD:227381 42/171 (25%)
C2H2 Zn finger 210..230 CDD:275370 6/19 (32%)
C2H2 Zn finger 238..260 CDD:275371 4/21 (19%)
C2H2 Zn finger 267..287 CDD:275368 0/19 (0%)
C2H2 Zn finger 295..315 CDD:275368 9/19 (47%)
zf-H2C2_2 309..332 CDD:290200 9/23 (39%)
C2H2 Zn finger 323..343 CDD:275368 7/19 (37%)
C2H2 Zn finger 351..374 CDD:275368 3/10 (30%)
C2H2 Zn finger 382..399 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446676
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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