DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and LOC110437726

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:XP_021331500.1 Gene:LOC110437726 / 110437726 -ID:- Length:550 Species:Danio rerio


Alignment Length:284 Identity:76/284 - (26%)
Similarity:126/284 - (44%) Gaps:44/284 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GKAETKQQAAKRARVQV-----------PAFKIVQA--TALKEPERQP-----GEEDECEEFMKE 141
            ||:|.|.|..|...:.:           |..::.:.  |..|..|.|.     .::..||..|:.
Zfish    59 GKSEKKTQKTKSHALFICCECGKSFSHKPKLEVHRRIHTGEKPYECQHCGKSFNQKQNCEAHMRI 123

  Fly   142 EMLDEEFQFSEPDDSMPSSEEEFFTETTEIPCHI-------------CGEMFSSQEVLERHIKAD 193
            ...::.::..:.|..        ||:...:..|:             ||:.|..::.|..|::..
Zfish   124 HTGEKPYKCQQCDMQ--------FTQKANLTVHMRVHTGEKTFNCQHCGKSFFQKQNLNVHMRVH 180

  Fly   194 TCQKSEQATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEVHWDKKKYQ 258
            |.:|..|  |..||......:.|::|:.:|.|:....|:.|.|.|.||:....||.:|..:|.|:
Zfish   181 TGEKPYQ--CQQCGKSFSQPQNLNVHLKVHTGEKPFTCQECGKSFIHKQKFEAHMRIHTGEKLYK 243

  Fly   259 CDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRTYKHHLRTHQTDRPRYPCPDCEKS 323
            |.:||:.||....:.:|:..| ||.....|:.|.:.|..|:..|.|:|.|..::| |.|..|.:|
Zfish   244 CLQCGKSFSQKTYLEDHMGIH-AEVKPFSCQQCGKSFNQKQKLKMHMRVHTGEKP-YSCQHCGRS 306

  Fly   324 FVDKYTLKVHKRVHQPVEKPESAE 347
            |....:|:||.|||.. |||.:.:
Zfish   307 FSQAPSLEVHMRVHTG-EKPYTCD 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 5/19 (26%)
C2H2 Zn finger 231..251 CDD:275368 8/19 (42%)
C2H2 Zn finger 259..308 CDD:275368 16/48 (33%)
C2H2 Zn finger 288..303 CDD:275370 4/14 (29%)
zf-C2H2 315..337 CDD:278523 9/21 (43%)
C2H2 Zn finger 317..337 CDD:275368 8/19 (42%)
LOC110437726XP_021331500.1 COG5048 73..485 CDD:227381 70/270 (26%)
C2H2 Zn finger 76..96 CDD:275368 1/19 (5%)
C2H2 Zn finger 104..124 CDD:275368 4/19 (21%)
C2H2 Zn finger 132..152 CDD:275368 4/27 (15%)
C2H2 Zn finger 160..180 CDD:275368 5/19 (26%)
C2H2 Zn finger 188..208 CDD:275368 5/19 (26%)
C2H2 Zn finger 216..236 CDD:275368 8/19 (42%)
C2H2 Zn finger 244..264 CDD:275368 6/19 (32%)
C2H2 Zn finger 272..292 CDD:275368 7/19 (37%)
C2H2 Zn finger 300..320 CDD:275368 8/19 (42%)
C2H2 Zn finger 328..348 CDD:275368 0/2 (0%)
C2H2 Zn finger 356..376 CDD:275368
C2H2 Zn finger 384..404 CDD:275368
C2H2 Zn finger 412..432 CDD:275368
C2H2 Zn finger 440..460 CDD:275368
C2H2 Zn finger 468..488 CDD:275368
C2H2 Zn finger 496..514 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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