DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and si:cabz01054394.5

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:XP_009299258.1 Gene:si:cabz01054394.5 / 101886221 ZFINID:ZDB-GENE-161017-87 Length:441 Species:Danio rerio


Alignment Length:284 Identity:76/284 - (26%)
Similarity:114/284 - (40%) Gaps:71/284 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 TALKEPERQPGEEDECEEFMKEEMLDEEFQFSEPDDS-MPSSEEEFFTE---------------- 167
            ||..:.||        ||...||.|..:.:::|.... ||..:|:.|||                
Zfish     3 TAFIKKER--------EELTIEEPLSVKREYTEQQTGLMPLKKEQDFTEMDDNDQLENHHDLRKC 59

  Fly   168 -----------------TTEIPCHICGEMFSSQEVLERHIKADT---------CQKS-------- 198
                             |:.:.|..||:.|..::.|:.|:...|         |.||        
Zfish    60 TQTERTSSQKTSPKRKPTSPVSCSQCGKSFDRKKKLDVHMTIHTGEKPFSCQQCGKSFTQKGNLK 124

  Fly   199 ---------EQATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEVHWDK 254
                     ...:|..||........|.:||.:|.|:....|..|.:.|:||.|:..||..|..:
Zfish   125 VHMGIHTGENSVSCQQCGKSFTQKINLKVHMRIHTGEKPYSCGQCGQSFTHKNNLNAHMRSHSGQ 189

  Fly   255 KKYQCDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRTYKHHLRTHQTDRPRYPCPD 319
            |.:.|.:||.||:....:.||:..|..|: ...|..|.::|..|.:...|::.|..::| :||..
Zfish   190 KMFMCGQCGTRFTRKGGLENHMRIHTGEK-PFKCGQCGRRFTRKASLGTHMKIHTGEKP-FPCDQ 252

  Fly   320 CEKSFVDKYTLKVHKRVHQPVEKP 343
            |.|||..|.||..|||:|.. |:|
Zfish   253 CRKSFRRKVTLDSHKRIHTG-ERP 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 6/19 (32%)
C2H2 Zn finger 231..251 CDD:275368 8/19 (42%)
C2H2 Zn finger 259..308 CDD:275368 14/48 (29%)
C2H2 Zn finger 288..303 CDD:275370 4/14 (29%)
zf-C2H2 315..337 CDD:278523 12/21 (57%)
C2H2 Zn finger 317..337 CDD:275368 11/19 (58%)
si:cabz01054394.5XP_009299258.1 COG5048 <50..308 CDD:227381 60/229 (26%)
C2H2 Zn finger 82..102 CDD:275368 6/19 (32%)
C2H2 Zn finger 110..130 CDD:275368 3/19 (16%)
C2H2 Zn finger 138..158 CDD:275368 6/19 (32%)
C2H2 Zn finger 166..186 CDD:275368 8/19 (42%)
C2H2 Zn finger 194..214 CDD:275368 7/19 (37%)
C2H2 Zn finger 222..242 CDD:275368 5/19 (26%)
C2H2 Zn finger 250..270 CDD:275368 11/19 (58%)
C2H2 Zn finger 278..298 CDD:275368
C2H2 Zn finger 334..350 CDD:275368
C2H2 Zn finger 358..401 CDD:275368
C2H2 Zn finger 409..426 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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