DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sry-beta and si:ch211-161m3.6

DIOPT Version :9

Sequence 1:NP_001303451.1 Gene:Sry-beta / 43570 FlyBaseID:FBgn0003511 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_001314790.1 Gene:si:ch211-161m3.6 / 100005838 ZFINID:ZDB-GENE-161017-36 Length:295 Species:Danio rerio


Alignment Length:264 Identity:77/264 - (29%)
Similarity:113/264 - (42%) Gaps:56/264 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 EDECEEFMKEE-----MLDEEFQFSEPDDSMPSSEE-----------------EFFT-------- 166
            ::|||:...|:     |.|.|    |..|.:|..||                 .|.|        
Zfish     5 KEECEDIKTEDVFIVKMEDAE----EHTDPLPVKEESQELDEVEEKGPFENYQHFVTGGQSFHRA 65

  Fly   167 ---------ETTEIP------CHICGEMFSSQEVLERHIKADTCQKSEQATCNVCGLKVKDDEVL 216
                     :..||.      |..||:.|:.:..|.||::..|.:|  ..:|.:||........|
Zfish    66 RTDRTSSQEKVQEIDPISYFICFQCGKGFTQKGSLNRHMRTHTGEK--PYSCPLCGKSFNQHGNL 128

  Fly   217 DLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEVHWDKKKYQCDKCGERFSLSWLMYNHLMRHDA 281
            ::||.:|.|:|...|:.|.|.||.|.|:..||.||..:..:.|.:||..|:....:..|:..|..
Zfish   129 EVHMGVHSGETPFACQQCGKSFSRKGNLRYHMRVHTGECPFTCQQCGISFTAKGSLTRHMRIHTG 193

  Fly   282 EENALICEVCHQQFKTKRTYKHHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVH---QPVEKP 343
             |....|..|.:.|:...:.|.|:|||..::| |.|..|.|||.....||||.|:|   :|.|.|
Zfish   194 -ERPYTCSECGESFEQHGSLKVHMRTHTGEKP-YTCQQCGKSFDQHGNLKVHLRIHTGEKPYECP 256

  Fly   344 ESAE 347
            :.|:
Zfish   257 QCAK 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sry-betaNP_001303451.1 C2H2 Zn finger 203..223 CDD:275368 6/19 (32%)
C2H2 Zn finger 231..251 CDD:275368 9/19 (47%)
C2H2 Zn finger 259..308 CDD:275368 13/48 (27%)
C2H2 Zn finger 288..303 CDD:275370 3/14 (21%)
zf-C2H2 315..337 CDD:278523 11/21 (52%)
C2H2 Zn finger 317..337 CDD:275368 10/19 (53%)
si:ch211-161m3.6NP_001314790.1 COG5048 <65..234 CDD:227381 51/172 (30%)
zf-C2H2 85..107 CDD:278523 7/21 (33%)
C2H2 Zn finger 87..107 CDD:275368 7/19 (37%)
zf-H2C2_2 99..124 CDD:290200 8/26 (31%)
C2H2 Zn finger 115..135 CDD:275368 6/19 (32%)
zf-H2C2_2 127..152 CDD:290200 10/24 (42%)
C2H2 Zn finger 143..163 CDD:275368 9/19 (47%)
zf-H2C2_2 155..179 CDD:290200 8/23 (35%)
C2H2 Zn finger 171..191 CDD:275368 5/19 (26%)
zf-H2C2_2 183..208 CDD:290200 6/25 (24%)
C2H2 Zn finger 199..219 CDD:275368 6/19 (32%)
zf-H2C2_2 211..236 CDD:290200 12/25 (48%)
C2H2 Zn finger 227..247 CDD:275368 10/19 (53%)
zf-H2C2_2 239..264 CDD:290200 10/22 (45%)
C2H2 Zn finger 255..271 CDD:275368 2/6 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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