DRSC/TRiP Functional Genomics Resources

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Protein Alignment ZIPIC and zic2

DIOPT Version :10

Sequence 1:NP_651765.1 Gene:ZIPIC / 43566 FlyBaseID:FBgn0039740 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001017025.2 Gene:zic2 / 549779 XenbaseID:XB-GENE-482654 Length:501 Species:Xenopus tropicalis


Alignment Length:175 Identity:49/175 - (28%)
Similarity:79/175 - (45%) Gaps:43/175 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   261 SCPEKFSSRRAYNVHTKREHFPG-----YVC--DQC---GKTLQSYSGFIGHLQNHEPVKQFACP 315
            ||.:.||:......|...||..|     ::|  ::|   ||..::....:.|::.|...|.|.||
 Frog   291 SCNKTFSTMHELVTHVSVEHVGGPEQSNHICFWEECSREGKPFKAKYKLVNHIRVHTGEKPFPCP 355

  Fly   316 V--CPERFSRKFRLKHHMAWHSGETPYQCDV--CSKRFVHKVALYKHKMIHDSETKRLECQVCGF 376
            .  |.:.|:|...||.|...|:||.|:||:.  |.:||.           :.|:.|         
 Frog   356 FPGCGKVFARSENLKIHKRTHTGEKPFQCEFEGCDRRFA-----------NSSDRK--------- 400

  Fly   377 KTRTKAHLERHMRSHTGDKPFACPVCNKRFSQMYNMKAHLREHES 421
                     :||..||.|||:.|.:|:|.::...:::.|::.|||
 Frog   401 ---------KHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHES 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZIPICNP_651765.1 C2H2 Zn finger 286..306 CDD:275368 5/24 (21%)
C2H2 Zn finger 314..334 CDD:275368 8/21 (38%)
SFP1 <336..419 CDD:227516 21/84 (25%)
C2H2 Zn finger 342..391 CDD:275368 8/50 (16%)
zf-H2C2_2 383..408 CDD:463886 10/24 (42%)
C2H2 Zn finger 399..419 CDD:275368 4/19 (21%)
C2H2 Zn finger 432..449 CDD:275368
zic2NP_001017025.2 zf_ZIC 269..314 CDD:436441 7/22 (32%)
COG5048 <284..438 CDD:227381 49/175 (28%)
C2H2 Zn finger 324..346 CDD:275368 4/21 (19%)
C2H2 Zn finger 354..376 CDD:275368 8/21 (38%)
C2H2 Zn finger 384..406 CDD:275368 8/50 (16%)
C2H2 Zn finger 414..434 CDD:275368 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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