DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Axn and Rgs12

DIOPT Version :9

Sequence 1:NP_733336.1 Gene:Axn / 43565 FlyBaseID:FBgn0026597 Length:745 Species:Drosophila melanogaster
Sequence 2:XP_006251413.1 Gene:Rgs12 / 54292 RGDID:3564 Length:1457 Species:Rattus norvegicus


Alignment Length:731 Identity:157/731 - (21%)
Similarity:252/731 - (34%) Gaps:180/731 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 NWARTLNHLLEDRDGVELFKKYVEEEAPAYNDHLNFYFACEGLKQ--QTDPEKIKQIIGAIY-RF 111
            :||.:...||:|..||..|..::.:|..  .:::.|:.|||....  ..|.:::......|: :|
  Rat   711 SWAVSFERLLQDPVGVRYFSDFLRKEFS--EENILFWQACECFSHVPAHDKKELSYRAREIFSKF 773

  Fly   112 L-RKSQLSISDDLRAQIKAIKTNPEIPLSPH--IFDPMQRHVEVTIRDNIYPTFLCSEMY----I 169
            | .|:...::.|.:||:.     .:|..:||  :|...|..:...::.:.|..||.|::|    :
  Rat   774 LCSKATTPVNIDSQAQLA-----DDILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKSQLYQECVL 833

  Fly   170 LYIQQMSAQQERCTSSGATGSGSAGSSGSGGSSLAGACALPPTTASGK------------QQLPQ 222
            ..::..:....:...|......|..|..|..|:        |...|||            ::..:
  Rat   834 AEVEGRTLPDSQQVPSSPASKHSISSDHSNVST--------PKKLSGKSKSGRSLNEDVGEEDSE 890

  Fly   223 LVPPGAFINLPVSSVSG-----------------PPAGTC--SASGSVYGPSTSASSSGSISATD 268
            ....|||.:...|..:|                 ...|.|  .:.|||       ||:||:..::
  Rat   891 KKRKGAFFSWSRSRSTGRSQKKKDHGDHAHDALHANGGLCRRESQGSV-------SSAGSLDLSE 948

  Fly   269 TLPRSSTLPTLHEDSVLSLC-----DDFEKVQMQEGGGSLGS---------GSVGA-------GA 312
            ....|:    |..|.....|     |....|...:.|.|:..         |..||       |.
  Rat   949 ACRTSA----LERDKAAKHCCVHLPDGTSCVVAVKSGFSIKEILSGLCERHGINGAAVDLFLVGG 1009

  Fly   313 RAP-----DYPIRLTRDLLIATQKR---RLEIRPPG-AHGYVYNPSTTNTS----YVPNSRVDSE 364
            ..|     |..|..||||.:  :||   ||::.|.. :.|....|:...|.    .|....:|..
  Rat  1010 DKPLVLHQDSSILATRDLRL--EKRTLFRLDLVPINRSVGLKAKPTKPVTEVLRPVVAKYGLDLG 1072

  Fly   365 RASVSSGGRTDSDTMSISSCSMDGRPYI------QRRHSSTESK---AIRQSAMANKETNTFQVI 420
            ...|...|..:...:.....|:||:..|      .|...|||.:   .::||:..|..       
  Rat  1073 SLLVRLSGEKEPLDLGAPISSLDGQRVILEERDPSRGKVSTEKQKGAPVKQSSAVNSS------- 1130

  Fly   421 PRTQRLHS--NEHRPLKEEELVSLLIPKLEEVKRKRDLEERARERNPGAALLTNERSSASDRAFA 483
            ||.   ||  .|.|.|.:...:.:   :.|..|..||  .|..:|....|.:..::....:...|
  Rat  1131 PRN---HSAMGEERTLGKSNSIKI---RGENGKSARD--PRLSKREESIAKIGKKKYQKINLDEA 1187

  Fly   484 EAIREKFALDEDNDQDILDQH--------VSRVWKDQTPHRSPGTMSPCPPIP--SRRRTATHDS 538
            |...|..:..:.|..|  ||.        |...:....|..|...:|..||:.  |:|...:|. 
  Rat  1188 EEFFELISKAQSNRAD--DQRGLLRKEDLVLPEFLRLPPGSSELALSSPPPVKGFSKRAVTSHG- 1249

  Fly   539 GMVSDGAMSLSGHSMKHSKSMP--DHSSCSRKLTNKWPSMNTDSGISMFSADTVTKYKDASSRSG 601
               .:||:...........:.|  ..|.||        :.:..|..|..||.:...........|
  Rat  1250 ---QEGAVQTEESYSDSPATSPASAQSPCS--------AYSPGSAHSPGSAHSPGSAHSTPGPPG 1303

  Fly   602 S----------STASKLEE----AKRRLEDEPRRSRRYAQPPMQHLSQQPLASFSSSSSGGSISL 652
            :          |..|.::|    |.|||..|....      .:|.:.::.:|..:.... |.||.
  Rat  1304 TAQPGEKPTKPSCISTVQEGTTQAWRRLSPELEAG------GIQTVEEEQVADLTLMGE-GDISS 1361

  Fly   653 PHQ----PPPLPAKPP 664
            |:.    |||||...|
  Rat  1362 PNSTLLPPPPLPQDTP 1377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AxnNP_733336.1 RGS 55..170 CDD:295367 29/124 (23%)
Axin_b-cat_bind 494..543 CDD:285982 13/58 (22%)
DIX 665..739 CDD:279160 157/731 (21%)
Rgs12XP_006251413.1 PDZ_signaling 19..94 CDD:238492
PTB_RGS12 227..358 CDD:269984
RGS_RGS12 716..830 CDD:188696 29/120 (24%)
RGS12_us1 836..949 CDD:406910 23/127 (18%)
RBD1_RGS12 962..1031 CDD:340656 16/70 (23%)
Ubiquitin_like_fold 1032..1104 CDD:421700 15/71 (21%)
RGS12_us2 1106..1180 CDD:406908 21/88 (24%)
GoLoco 1188..1209 CDD:214645 6/22 (27%)
RGS12_usC 1238..1387 CDD:406909 34/159 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.