DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nph and npm2

DIOPT Version :9

Sequence 1:NP_001097975.1 Gene:Nph / 43559 FlyBaseID:FBgn0039735 Length:156 Species:Drosophila melanogaster
Sequence 2:XP_012814520.1 Gene:npm2 / 549692 XenbaseID:XB-GENE-999546 Length:200 Species:Xenopus tropicalis


Alignment Length:170 Identity:53/170 - (31%)
Similarity:84/170 - (49%) Gaps:38/170 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 YGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAETNINDDGEKKTLK 71
            :|..|||:....:|::.:..::.   .|:|.::.:.||.:|| .||:||:..|  .::|.:|  .
 Frog    19 WGCELSEQNKTFEFKISEDEDKC---EHQLALRTVCLGDKAK-DEFHVVEIVT--KEEGAEK--P 75

  Fly    72 IPIAVLKVGETRSLRP-----NVEFPNGSVTFKLVQGSGPVHVCGK-VEMNFGEFDDGQIYEEYS 130
            :|||.||    .|:.|     .:|. ...|||:|..|||||::.|: |.|     :|...:.|..
 Frog    76 VPIATLK----PSILPMATMVGIEL-TPPVTFRLKAGSGPVYISGQHVAM-----EDDYSWAEEE 130

  Fly   131 DEEEDSELEFDEE--------------AAPQTNGKSNKKK 156
            ||.|..|.|.:||              ||.:..|::.|||
 Frog   131 DEGEGEEGEEEEEEEDPESPPKAVKRPAATKKAGQAKKKK 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NphNP_001097975.1 Nucleoplasmin 6..112 CDD:397268 35/109 (32%)
npm2XP_012814520.1 Nucleoplasmin 18..118 CDD:367319 36/111 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10665
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 82 1.000 Inparanoid score I5031
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1485080at2759
OrthoFinder 1 1.000 - - FOG0000973
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22747
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.160

Return to query results.
Submit another query.