DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nph and npm1

DIOPT Version :10

Sequence 1:NP_651760.1 Gene:Nph / 43559 FlyBaseID:FBgn0039735 Length:156 Species:Drosophila melanogaster
Sequence 2:NP_988883.1 Gene:npm1 / 394478 XenbaseID:XB-GENE-1019571 Length:304 Species:Xenopus tropicalis


Alignment Length:215 Identity:57/215 - (26%)
Similarity:83/215 - (38%) Gaps:84/215 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 YGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAETNINDDGEKKTLK 71
            :|..|...:....|:|.|...|     |:|.::.:|:|..|| .|.:||:|| .||.:|  ||:|
 Frog    20 FGCELKADKREYSFKVEDDENE-----HQLSLRTVSVGASAK-DELHVVEAE-GINYEG--KTIK 75

  Fly    72 IPIAVLKVGETRSLRPNVEFPNGSVT----FKLVQGSGPVHVCG--------------------- 111
            |.:|.||    .|::|.|......:|    .:|..|||||:|.|                     
 Frog    76 ITLASLK----PSVQPTVSLGGFEITPPVILRLKSGSGPVYVSGQHLVALEDLESTDDEDEEHDV 136

  Fly   112 ---------------KV-----------EMNFGEFDDGQIYEEYSDEEEDSELEFDEEAAP---- 146
                           ||           |.:..|.||    ::..|||||.|.|.:|:..|    
 Frog   137 PSPKNAKRTASDAASKVPRKKTRLEEEDEADSDEDDD----DDDDDEEEDDEDEDEEDETPVKKT 197

  Fly   147 ------------QTNGKSNK 154
                        ..|||:::
 Frog   198 DLPTKPKAAQKLNHNGKASE 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NphNP_651760.1 Nucleoplasmin 6..112 CDD:460792 39/144 (27%)
npm1NP_988883.1 Nucleoplasmin 19..119 CDD:460792 39/111 (35%)
gly_rich_SclB <225..247 CDD:468478
NPM1-C 251..299 CDD:465081
Blue background indicates that the domain is not in the aligned region.

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