DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and NAM8

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:193 Identity:48/193 - (24%)
Similarity:69/193 - (35%) Gaps:55/193 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSL-PRCKPEELRRLFTN-YGSVVECDVMN--------RCAFVHLENTDMAEAAIAALNGTI 61
            :|||.| |.....:|..||.| |.|.....:::        ...||...|:|..:.|::.:.|..
Yeast   165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVF 229

  Fly    62 FKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGR 126
            ..|:.|       |.||..|.: |..||:|...|.|             |:.|     .|.|..|
Yeast   230 LNGRAI-------KVGPTSGQQ-QHVSGNNDYNRSS-------------SSLN-----NENVDSR 268

  Fly   127 FSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGP-------PNNESSNQGQGFRNKFAGG 182
            |.::|....::.....|..|   |:..|...|..:.|       |||.:         .|.||
Yeast   269 FLSKGQSFLSNGNNNMGFKR---NHMSQFIYPVQQQPSLNHFTDPNNTT---------VFIGG 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 19/72 (26%)
PABP-1234 <18..173 CDD:130689 40/170 (24%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023
RRM2_SECp43_like 162..241 CDD:409781 22/82 (27%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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