DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7903 and HRB1

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_014394.2 Gene:HRB1 / 855728 SGDID:S000004949 Length:454 Species:Saccharomyces cerevisiae


Alignment Length:232 Identity:46/232 - (19%)
Similarity:78/232 - (33%) Gaps:65/232 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NTTAKVFVGSLP-RCKPEELRRLFTNYGSVVECDVMNR------CAFVHLENTDMAEAAIAALNG 59
            |.:..:|||:|. ...||:|...|:..|.||..|::..      ...|...|:|..:.||...:|
Yeast   158 NYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDG 222

  Fly    60 TIFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHE-------SNTNFK- 116
            ..|..:.|.|....|           |.|.:...|:.........:::.||       ::.|:: 
Yeast   223 AFFMDRKIFVRQDNP-----------PPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQA 276

  Fly   117 -RNFREEVGG------RFSNEGPRSSNSSAAKFGPVRN-------------ESNYRQQRS----- 156
             ::..:|.|.      ....:|. |:.|....|..:::             |.|....:|     
Yeast   277 LKDIFKECGNVAHADVELDGDGV-STGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVH 340

  Fly   157 ---------APYSKGPPNNESSNQGQGFRNKFAGGGK 184
                     .|....|.|.|:    :.|.....|||:
Yeast   341 NHSDGDDVDIPMDDSPVNEEA----RKFTENVVGGGE 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 20/70 (29%)
PABP-1234 <18..173 CDD:130689 36/202 (18%)
HRB1NP_014394.2 PRK12678 <29..>85 CDD:237171
RRM1_HRB1_GBP2 160..236 CDD:410184 21/75 (28%)
RRM2_HRB1_GBP2 262..334 CDD:410185 10/72 (14%)
RRM3_HRB1_GBP2 374..452 CDD:410186 46/232 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.