DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7903 and RBP45B

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:212 Identity:49/212 - (23%)
Similarity:68/212 - (32%) Gaps:83/212 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NTTAKVFVGSLPRCKPEE-LRRLFTNYGSVVECDVM--NRCAFVHLENTDMAEAAIAALNGTIFK 63
            |||  ||||.|.....:: |:.:|:.||.:|...:.  .||.||.......||.|:..|||....
plant   260 NTT--VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322

  Fly    64 GQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGRFS 128
            |..:.:..||        |.....|||     |||...||                         
plant   323 GTTVRLSWGR--------SPSNKQSGD-----PSQFYYGG------------------------- 349

  Fly   129 NEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSAGNEG 193
                         :|..:.:..|...:.       ||        .:...::|||..||      
plant   350 -------------YGQGQEQYGYTMPQD-------PN--------AYYGGYSGGGYSGG------ 380

  Fly   194 RFGSNRFQQRDNSGPQP 210
                  :||...:|.||
plant   381 ------YQQTPQAGQQP 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 21/66 (32%)
PABP-1234 <18..173 CDD:130689 31/157 (20%)
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780
RRM2_SECp43_like 154..233 CDD:409781
RRM_SF 260..331 CDD:473069 24/72 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.