DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and RBM4B

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_113680.1 Gene:RBM4B / 83759 HGNCID:28842 Length:359 Species:Homo sapiens


Alignment Length:172 Identity:50/172 - (29%)
Similarity:71/172 - (41%) Gaps:33/172 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAKVFVGSL-PRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPI 67
            :.|:.||:: |.|..:|||..|..||.|:|||::...||||:|..:.|..||..|:.|.|:|:.:
Human    77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 141

  Fly    68 VVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGRFSNEGP 132
            .|:....:.      |..||.||..|                        .:|....|.:|.|.|
Human   142 HVQLSTSRL------RTAPGMGDQSG------------------------CYRCGKEGHWSKECP 176

  Fly   133 RSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQG 174
            .......|.|....|| .|...|: ||:.|...:...|...|
Human   177 VDRTGRVADFTEQYNE-QYGAVRT-PYTMGYGESMYYNDAYG 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 48/164 (29%)
RRM_SF 6..70 CDD:302621 27/64 (42%)
RBM4BNP_113680.1 RRM1_RBM4 2..68 CDD:410018
RRM2_RBM4 78..144 CDD:410019 27/65 (42%)
PTZ00368 <145..>181 CDD:173561 11/65 (17%)
ZnF_C2HC 161..176 CDD:197667 5/38 (13%)
Interaction with TNPO3. /evidence=ECO:0000250 196..359 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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