DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and pabpn1l

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_021333291.1 Gene:pabpn1l / 796580 ZFINID:ZDB-GENE-080709-5 Length:166 Species:Danio rerio


Alignment Length:107 Identity:31/107 - (28%)
Similarity:46/107 - (42%) Gaps:19/107 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLP-RCKPEELRRLFTNYGSVVECDV-MNRC-----AFVHLENTDMAEAAIA-ALNGTIFK 63
            ::||::. ....:||...|.:.|.|....: .||.     .|.::|.:|......| ||:.|:|:
Zfish    39 IYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFR 103

  Fly    64 GQPIVVEAGRPK---------YGPGGGSRGQ--PGSGDNPGR 94
            |:.|.|...|..         |..||.|||:  ..|..||.|
Zfish   104 GRVIKVSPKRTNIPGFSTTDVYLRGGWSRGRGVRASRFNPFR 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 19/70 (27%)
PABP-1234 <18..173 CDD:130689 29/95 (31%)
pabpn1lXP_021333291.1 RRM_SF 38..113 CDD:473069 20/73 (27%)

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