DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and hnrnpa3

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001315077.1 Gene:hnrnpa3 / 751729 ZFINID:ZDB-GENE-060224-1 Length:340 Species:Danio rerio


Alignment Length:396 Identity:111/396 - (28%)
Similarity:144/396 - (36%) Gaps:104/396 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KVFVGSLP-RCKPEELRRLFTNYGSVVECDVMNRCA--------FVHLENTDMAEAAIAALNGTI 61
            |:|:|.|. ....:.||..|..:|.:.:|.||...|        ||...:....:||:.|     
Zfish    14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA----- 73

  Fly    62 FKGQPIVVEAGR---PKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFRE-- 121
               :|..|: ||   ||.........:||:    .....::..||..:...|      .:.||  
Zfish    74 ---RPHKVD-GRVVEPKRAVSREDSNKPGA----HLTVKKIFVGGIKEDTEE------YHIREYF 124

  Fly   122 EVGGRFSNEGPRSSNSSAAKFG--------------PVRNESNYRQQRSAPYSKGPPNNE---SS 169
            |..|:..........|:..|.|              .|..:.:.....:....|..|..|   ||
Zfish   125 ECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQSSS 189

  Fly   170 NQGQGFRNKFAGGGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQG 234
            ||    |.:..|||.|.|..||.||.|                       ..|.||||:..:..|
Zfish   190 NQ----RYRGGGGGNFTGRGGNFGRGG-----------------------YGGGRGGGDGYNGFG 227

  Fly   235 GSSSSGGGGSVNQRAG-GGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGN 298
            |:...|.||....|.| |||||..:                 |.|.|.|| |..|..:||..|||
Zfish   228 GNYGGGPGGYGGGRGGYGGGPGYGN-----------------QGGGGGFG-GFDNYNDRGNFGGN 274

  Fly   299 PPGGRGFFNGGGGG-FNDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINAYHSEFPPLGSGGGG 362
            ..||.|...||||| :||..:...:.|:  .||.|....||||....|...|.|     |.||||
Zfish   275 FGGGGGSSGGGGGGNYNDFGNYGGQQSN--FGPMKGNNFGGRNSGPYGGGGYGS-----GGGGGG 332

  Fly   363 PGQRNR 368
            .|..:|
Zfish   333 GGYGSR 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 39/192 (20%)
RRM_SF 6..70 CDD:302621 18/72 (25%)
hnrnpa3NP_001315077.1 RRM1_hnRNPA_like 14..91 CDD:241022 23/85 (27%)
RRM2_hnRNPA3 104..183 CDD:241026 13/84 (15%)
HnRNPA1 <296..>315 CDD:288479 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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