DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Rbms3

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_017451688.3 Gene:Rbms3 / 680726 RGDID:1588240 Length:448 Species:Rattus norvegicus


Alignment Length:174 Identity:36/174 - (20%)
Similarity:63/174 - (36%) Gaps:20/174 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLPRCKPE-ELRRLFTNYGSVVECDVMNRC-------AFVHLENTDMAEAAIAALNGTIFK 63
            :::.:||....| ||..:...:|.|:...::...       .|..:|:|:..|..|...||...|
  Rat   154 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLK 218

  Fly    64 GQPIVVEAGRP---KYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGG 125
            ..|.:.....|   |:..||..:.|..:......||...:|.......::.....:..|......
  Rat   219 TPPGIPAPSEPLLCKFADGGQKKRQSQNKHTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYS 283

  Fly   126 RFSNEG-PRSSNSSAAKFGPVRNESNYRQQRSA-----PYSKGP 163
            ..:|.. |::|.:......||   |.|:.|.::     ||...|
  Rat   284 LATNRMIPQTSITPFIAASPV---STYQVQSTSWTPHLPYIMQP 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 16/70 (23%)
PABP-1234 <18..173 CDD:130689 34/163 (21%)
Rbms3XP_017451688.3 None

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