DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7903 and hnrnpd

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001025523.1 Gene:hnrnpd / 594903 XenbaseID:XB-GENE-988375 Length:295 Species:Xenopus tropicalis


Alignment Length:298 Identity:69/298 - (23%)
Similarity:106/298 - (35%) Gaps:88/298 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KVFVGSLP-RCKPEELRRLFTNYGSVVECDV-----------MNRCAFVHLENTD-MAEAAIAAL 57
            |:|:|.|. ....::|:..|:.:|.||:|.:           .....|...|..| :.|.....|
 Frog    39 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQKEHKL 103

  Fly    58 NGTIF---KGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGG----GADKRPHESNTNF 115
            ||.:.   :.:.:..:....|...||      .|.|.|..:..:..|.    .|.:.|.::.||.
 Frog   104 NGKVIDPKRAKAMKTKEPVKKIFVGG------LSPDTPEEKIREYFGTFGEIEAIELPMDNKTNK 162

  Fly   116 KR-----NFREE------VGGRFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESS 169
            :|     .|:||      :..::.|.|     .|..:.....::..|:||               
 Frog   163 RRGFCFITFKEEDPVKKIMEKKYHNVG-----LSKCEIKVALSKEQYQQQ--------------- 207

  Fly   170 NQGQGFRNKFAGGGKFGGSAGNEGRFG-SNRFQQRDNSGPQPGRRNFKNSPTSGY------RGGG 227
             |..|.|     ||  |.|:...||.| |..:.|        |..|:.|...|.|      .||.
 Frog   208 -QQWGTR-----GG--GSSSRPRGRGGVSQTWSQ--------GYSNYWNPSYSSYGYNNQGYGGY 256

  Fly   228 NNSDFQGGSSSSGGGGSVNQRAGGGGPGPSHVRQDRRG 265
            .|.|: .|.:..|.|...||::|.|       :..|||
 Frog   257 GNYDY-SGYNYYGYGDYSNQQSGYG-------KTARRG 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 38/192 (20%)
RRM_SF 6..70 CDD:302621 17/79 (22%)
hnrnpdNP_001025523.1 RRM1_hnRNPD 40..113 CDD:241200 16/72 (22%)
RRM2_hnRNPD 124..198 CDD:241027 18/84 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.