DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Rbms1

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_006500003.1 Gene:Rbms1 / 56878 MGIID:1861774 Length:419 Species:Mus musculus


Alignment Length:101 Identity:27/101 - (26%)
Similarity:42/101 - (41%) Gaps:11/101 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLPRCKPE-ELRRLFTNYGSVVECDVMNRCA-------FVHLENTDMAEAAIAALNGTIFK 63
            :::.:||....| ||..:...:|.|:...|:...:       |..:|:|:..||.|...||...|
Mouse   143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIK 207

  Fly    64 GQPIVVEAGRP---KYGPGGGSRGQPGSGDNPGRRP 96
            ..|.|.....|   |:..||..:.|..:...|..||
Mouse   208 TPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRP 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 19/70 (27%)
PABP-1234 <18..173 CDD:130689 25/90 (28%)
Rbms1XP_006500003.1 RRM1_MSSP1 55..140 CDD:409900
RRM2_MSSP1 141..225 CDD:409903 21/81 (26%)
Blue background indicates that the domain is not in the aligned region.

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