DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and trnau1apa

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001018445.1 Gene:trnau1apa / 553636 ZFINID:ZDB-GENE-050522-502 Length:314 Species:Danio rerio


Alignment Length:94 Identity:23/94 - (24%)
Similarity:38/94 - (40%) Gaps:15/94 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNTTAKVFVGSL-PRCKPEELRRLFTNYG-SVVECDVMN--------RCAFVHLENTDMAEAAIA 55
            ||:   :::|:| |....:.:.|.|...| :||:..::.        ...||.|.:....|..:.
Zfish     1 MNS---LWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62

  Fly    56 ALNGTIFKG--QPIVVEAGRPKYGPGGGS 82
            .:||....|  .|...:..|..||..|.|
Zfish    63 KVNGKPLPGATPPKRFKLSRSNYGKQGES 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 16/75 (21%)
PABP-1234 <18..173 CDD:130689 18/76 (24%)
trnau1apaNP_001018445.1 RRM_SF 3..86 CDD:473069 17/85 (20%)
RRM_SF 93..174 CDD:473069
Trnau1ap 183..289 CDD:465438
Blue background indicates that the domain is not in the aligned region.

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