DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7903 and msi1b

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_073765489.1 Gene:msi1b / 541389 ZFINID:ZDB-GENE-050320-86 Length:349 Species:Danio rerio


Alignment Length:93 Identity:26/93 - (27%)
Similarity:43/93 - (46%) Gaps:12/93 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAKVFVGSLP-RCKPEELRRLFTNYGSVVECDVM-----NR---CAFVHLENTDMAEAAIAALNG 59
            |.|:|||.|. ....|::::.|..:|.|.:..:|     ||   ..||..||.|:.| .:..::.
Zfish   108 TKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVE-KVCEIHF 171

  Fly    60 TIFKGQPIVVEAGRPK--YGPGGGSRGQ 85
            .....:.:..:..:||  ..|.|.|||:
Zfish   172 HEINNKMVECKKAQPKEVMSPTGSSRGR 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 18/72 (25%)
PABP-1234 <18..173 CDD:130689 20/78 (26%)
msi1bXP_073765489.1 None

Return to query results.
Submit another query.