Sequence 1: | NP_651755.2 | Gene: | CG7903 / 43554 | FlyBaseID: | FBgn0039730 | Length: | 384 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001007015.2 | Gene: | Rbm4b / 474154 | RGDID: | 1359343 | Length: | 357 | Species: | Rattus norvegicus |
Alignment Length: | 270 | Identity: | 70/270 - (25%) |
---|---|---|---|
Similarity: | 110/270 - (40%) | Gaps: | 47/270 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 TAKVFVGSL-PRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPI 67
Fly 68 VVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESN---TNFKRNFREEVG----- 124
Fly 125 -------GRFSNEG-----------PRSSNSSAAKFGPVRNESNYRQQRSA----PYSKGPPNNE 167
Fly 168 SSNQGQGF-RNKFAGGGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPT--SGYRGGGNN 229
Fly 230 SDFQGGSSSS 239 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG7903 | NP_651755.2 | RRM | <4..168 | CDD:223796 | 49/194 (25%) |
RRM_SF | 6..70 | CDD:302621 | 27/64 (42%) | ||
Rbm4b | NP_001007015.2 | RRM1_RBM4 | 2..68 | CDD:241050 | |
RRM2_RBM4 | 78..144 | CDD:241051 | 27/65 (42%) | ||
ZnF_C2HC | 161..176 | CDD:197667 | 2/14 (14%) | ||
Interaction with TNPO3. /evidence=ECO:0000250 | 196..357 | 31/145 (21%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1563362at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |