DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Rbm4b

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001007015.2 Gene:Rbm4b / 474154 RGDID:1359343 Length:357 Species:Rattus norvegicus


Alignment Length:270 Identity:70/270 - (25%)
Similarity:110/270 - (40%) Gaps:47/270 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAKVFVGSL-PRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPI 67
            :.|:.||:: |.|..:|||..|..||.|:|||::...||||:|..:.|..||..|:.|.|:|:.:
  Rat    77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 141

  Fly    68 VVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESN---TNFKRNFREEVG----- 124
            .|:....:.      |..||.||..|......:|..:.:.|.:..   .:|...:.|:.|     
  Rat   142 HVQLSTSRL------RTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTP 200

  Fly   125 -------GRFSNEG-----------PRSSNSSAAKFGPVRNESNYRQQRSA----PYSKGPPNNE 167
                   ..:.|:.           .||..:.||  ....:..||.:|..:    ..|...|::.
  Rat   201 YTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAA--AAAASAYNYAEQTMSHLPQVQSSAVPSHL 263

  Fly   168 SSNQGQGF-RNKFAGGGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPT--SGYRGGGNN 229
            :|.....: |:.....|....||..... .|:.:..||.|   |.|||....||  .|| |.|..
  Rat   264 NSTSVDPYDRHLLQNSGSAATSAAMAAA-ASSSYYGRDRS---PLRRNAAVLPTVGEGY-GYGPE 323

  Fly   230 SDFQGGSSSS 239
            |:....|:::
  Rat   324 SEMSQASAAT 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 49/194 (25%)
RRM_SF 6..70 CDD:302621 27/64 (42%)
Rbm4bNP_001007015.2 RRM1_RBM4 2..68 CDD:241050
RRM2_RBM4 78..144 CDD:241051 27/65 (42%)
ZnF_C2HC 161..176 CDD:197667 2/14 (14%)
Interaction with TNPO3. /evidence=ECO:0000250 196..357 31/145 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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