DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and tra2b

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001006878.1 Gene:tra2b / 448667 XenbaseID:XB-GENE-5864557 Length:293 Species:Xenopus tropicalis


Alignment Length:179 Identity:45/179 - (25%)
Similarity:70/179 - (39%) Gaps:55/179 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ELRRLFTNYGSVVECDVM--------NRCAFVHLENTDMAEAAIAALNGTIFKGQPIVVE----- 70
            :||.:|:.||.:.:..::        ...:||:.||.|.|:.|....||....|:.|.|:     
 Frog   137 DLREVFSKYGPISDVSIVYDQQSRRSRGFSFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 201

  Fly    71 ----------AGRPKYGPGGGSRGQPGSGDNPGRRPSQVQG---GGADKRPHESNTNFKRNFREE 122
                      .|||.|   |.||          ||....:|   ||.|.|.:     :.|::|  
 Frog   202 RPHTPTPGIYMGRPTY---GSSR----------RRDYYDRGYDRGGYDDREY-----YSRSYR-- 246

  Fly   123 VGGRFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQ 171
             ||.....|.|.        |..|::.:.|:..|..||:|...:.|.::
 Frog   247 -GGGGGGGGWRG--------GQDRDQFSRRRSPSPYYSRGSYRSRSRSR 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 44/174 (25%)
RRM_SF 6..70 CDD:302621 16/58 (28%)
tra2bNP_001006878.1 RRM_SF 113..201 CDD:388407 17/63 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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