DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and CstF64

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:221 Identity:44/221 - (19%)
Similarity:69/221 - (31%) Gaps:65/221 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VGSLPRCKPEELRRLFTNYGSVVECDVMN--RCAFVHLENTDMAEAAIAAL-----------NGT 60
            |.|||   ||::..|..   .:..|.|.|  ....:.:.|..:|.|.:.|:           .|.
  Fly   131 VASLP---PEQMYELMK---QMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGM 189

  Fly    61 IFKGQ---PIVVEAGRPKYGPGGGS-RGQ----------PGSGDNPGRRPSQVQGGGADKRPHES 111
            :||..   |::  .|.|..|||..: .||          |.......:.|..|.|.|.....|.:
  Fly   190 LFKANQMPPVL--GGNPHQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPN 252

  Fly   112 NTNFK---------------RNFREEVGGRFSNEGPRSSNSSAAKFG-PVRNESNYRQQRSAPYS 160
            :.:.:               |...:::.....|..|.......|:.. |.:.:....|...|||.
  Fly   253 DIDLRMVPGGPMPMDPRMMGRGMDQDLRASLPNPVPPPLMDPRARAQMPPQQQQGVPQAPPAPYP 317

  Fly   161 KGP--------------PNNESSNQG 172
            ..|              |..::..||
  Fly   318 SDPRQRPMDPRLRAGPGPQQQAPPQG 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 18/76 (24%)
PABP-1234 <18..173 CDD:130689 39/212 (18%)
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072
CSTF2_hinge 111..190 CDD:433869 15/64 (23%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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