DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and zgc:77262

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_991217.1 Gene:zgc:77262 / 402952 ZFINID:ZDB-GENE-040426-1811 Length:331 Species:Danio rerio


Alignment Length:291 Identity:66/291 - (22%)
Similarity:102/291 - (35%) Gaps:81/291 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNTTAKVFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKG 64
            :....|::||::|. ....:::.||..:|.|||||::...||||::..:.|..|||.||.:...|
Zfish    74 VRNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDG 138

  Fly    65 QPIVVEAGRPKYGPGGGSRGQ-----------PGSGDNP----------------GRRPSQVQGG 102
            |.|.|...|.  .|....||:           |...|:|                ||.|......
Zfish   139 QKIFVSLSRS--NPSRNGRGEDYYPPPPPHYPPHPHDHPHFLPPRPPPRDYYPPRGRIPPPPPLP 201

  Fly   103 GADKRPHESNTNFKRNFREE----VGGRFSNEGPRS----------SNSSAAKFGPVRNESNYRQ 153
            ....|.:.....::|:.|.:    ...||.:..|..          |...|:::...|:....|:
Zfish   202 PPPPRSYYERDPYERSLRHDPYAPPSPRFYDRDPYDRRLPPPQRPVSPPVASRYYRERSPLGGRR 266

  Fly   154 QRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNS 218
            ....|....||       ..||...||..|.                    :|.|.|     .::
Zfish   267 SLLPPPPPPPP-------PAGFARSFARNGA--------------------SSAPPP-----PSA 299

  Fly   219 PTSGYR-----GGGNNSDFQGGSSSSGGGGS 244
            |:|.|:     .|.:..|:.....|:|.|.|
Zfish   300 PSSHYQRYSVGSGFDKDDYMEDKYSNGFGRS 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 25/64 (39%)
PABP-1234 <18..173 CDD:130689 45/195 (23%)
zgc:77262NP_991217.1 RRM1_2_CoAA_like 3..68 CDD:409779
RRM1_2_CoAA_like 79..143 CDD:409779 25/63 (40%)
Blue background indicates that the domain is not in the aligned region.

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