DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and tia1

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:181 Identity:40/181 - (22%)
Similarity:67/181 - (37%) Gaps:49/181 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLPRCKPEEL-RRLFTNYGSVVECDVM--NRCAFVHLENTDMAEAAIAALNGTIFKGQPI- 67
            |:.|.:.....|:| |:.|:.:|.::|..|.  ...:||...:.:.|..||.::|||..:|..: 
 Frog   216 VYCGGVTSGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280

  Fly    68 ----------------VVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFK 116
                            |.||.:..:.|..|..||              ..|||.:........::
 Frog   281 CYWGKETPDMLNPVQQVSEASQISFPPPYGQWGQ--------------WYGGAQQIGQYVPNGWQ 331

  Fly   117 RNFREEVGGRFSNEGPRSSNSSAAKF-GP--------------VRNESNYR 152
            .......|..:|.:|...:.||||.: ||              :.|::.||
 Frog   332 MPAYGVYGQAWSQQGYSQTPSSAATWVGPNYGVQPQPGQNGTLITNQTGYR 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 19/82 (23%)
PABP-1234 <18..173 CDD:130689 38/170 (22%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027
RRM2_TIA1 104..181 CDD:410030
RRM3_TIAR 214..286 CDD:241064 18/69 (26%)
Blue background indicates that the domain is not in the aligned region.

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