DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and hnrnpa1b

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_956398.3 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:403 Species:Danio rerio


Alignment Length:408 Identity:110/408 - (26%)
Similarity:140/408 - (34%) Gaps:133/408 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTAKVFVGSLPRCKPE-ELRRLFTNYGSVVECDVM------NR--CAFVHLENTDMAEAAIA--- 55
            |..|:|||.:.....| .||..|..:|.:...::|      |:  .|||..::.|..:..:.   
Zfish   103 TVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKY 167

  Fly    56 -ALNG-------TIFKGQPIVVEAGRPKYGPGGGSRGQPGS-GDNPGRRPSQVQGGGADKRPHES 111
             .:||       .:.|.:  :...||...|.|||.||.... |:|.|.......|||...|    
Zfish   168 HTVNGHNCEVRKALSKQE--MANTGRGGGGGGGGDRGNFNRYGNNGGYNNDFGGGGGGGNR---- 226

  Fly   112 NTNFKRNFREEVGGRFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFR 176
            :..|.|      |||.:|.|........                   |..|   .:..|...|| 
Zfish   227 DGYFGR------GGRGNNFGGGGGGGGG-------------------YGGG---GDCYNNNNGF- 262

  Fly   177 NKFAGGGKFGGSAGN----EGRFGSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSS 237
                |||.:||..||    .|.:|.||                      ||.|||......|...
Zfish   263 ----GGGGYGGGGGNGGGSPGNYGGNR----------------------GYGGGGGGGHGYGNQG 301

  Fly   238 SSGGGGSVNQRAGGGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGNPPGG 302
            ...|||:    :||||.|.::...                     |||....||.|..||   ||
Zfish   302 GGYGGGN----SGGGGGGYNNYNN---------------------GNGNFGGGNFGGGGG---GG 338

  Fly   303 RGFFNGGGGGFNDRRDSSHETSSPQGGPSKRG-GSGGRNHNQNGINAYHSEFPPLGSGGGGPGQR 366
            .   :||||.:||  ..::.:.....||.|.. |.||||....| ..|..  ...||||||.|. 
Zfish   339 N---SGGGGNYND--FGNYNSQQSNYGPMKGNFGGGGRNSGPYG-GGYGG--GSSGSGGGGSGY- 394

  Fly   367 NRFNGPRPGPNMGGNRRF 384
                    |...|| |||
Zfish   395 --------GGGSGG-RRF 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 18/83 (22%)
PABP-1234 <18..173 CDD:130689 39/175 (22%)
hnrnpa1bNP_956398.3 None

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