DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Syncrip

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001382580.1 Gene:Syncrip / 363113 RGDID:1305683 Length:623 Species:Rattus norvegicus


Alignment Length:377 Identity:87/377 - (23%)
Similarity:124/377 - (32%) Gaps:126/377 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AKV---FVGSLPRCKPEE-LRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQ 65
            |||   ||.:|.....|| |.:.|:.:|.:.....:...||:|.:..|.|..|:..:||...:|:
  Rat   335 AKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399

  Fly    66 PIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGRFSNE 130
            .|.:...:|                     |.|                 ||.            
  Rat   400 NIEIVFAKP---------------------PDQ-----------------KRK------------ 414

  Fly   131 GPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSAGNEGRF 195
             .|.:...|||          .|.....|..|||:.....:|:|      .||: ||.......:
  Rat   415 -ERKAQRQAAK----------NQMYDDYYYYGPPHMPPPTRGRG------RGGR-GGYGYPPDYY 461

  Fly   196 GSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNN-----SDFQGGSSSSGGGGS----------- 244
            |...:.            ::.......||||..:     .|||.|:...||.|:           
  Rat   462 GYEDYY------------DYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGA 514

  Fly   245 --VNQRAG---GGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGNPPGGRG 304
              ...|||   .||||.:...:..||.|      |||.|.|       ..|.||..|||..|.| 
  Rat   515 APPRGRAGYSQRGGPGSARGVRGARGGA------QQQRGRG-------VRGARGGRGGNVGGKR- 565

  Fly   305 FFNGGGGGFNDRRDSSHETSSPQGG--PSKRGGSGGRNHNQN-GINAYHSEF 353
                ...|:|.......:|::...|  |..:....|.:|:.| |..:.:.||
  Rat   566 ----KADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENEEF 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 20/67 (30%)
PABP-1234 <18..173 CDD:130689 29/155 (19%)
SyncripNP_001382580.1 NURR_hnRNPQ 23..107 CDD:410954
hnRNP-R-Q 103..615 CDD:273732 87/377 (23%)
Blue background indicates that the domain is not in the aligned region.

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