DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and HNRNPCL1

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001013653.1 Gene:HNRNPCL1 / 343069 HGNCID:29295 Length:293 Species:Homo sapiens


Alignment Length:171 Identity:40/171 - (23%)
Similarity:66/171 - (38%) Gaps:44/171 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNTTAKVFVGSLPR--CKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFK 63
            ||  ::||:|:|..  .|..::..:|:.||.:..|.|....|||..:....|.||:|..:|.:..
Human    14 MN--SRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76

  Fly    64 GQPIVVE-AGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNF-------- 119
            .|.:.:. |..||.     :||..|    ..|..:::.|...|     .:..|:|::        
Human    77 SQVVDINLAAEPKV-----NRGNAG----VKRSAAEMYGSSFD-----LDYGFQRDYYDGMYSFP 127

  Fly   120 -----------------REEVGGRFSNEGPRSSNSSAAKFG 143
                             |:.:.|..|..|....||.:.|.|
Human   128 ARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRG 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796 38/168 (23%)
RRM_SF 6..70 CDD:302621 19/65 (29%)
HNRNPCL1NP_001013653.1 RRM_hnRNPC_like 16..83 CDD:240787 19/66 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 137..177 8/32 (25%)
Drc1-Sld2 <171..288 CDD:314562
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..293
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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