DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Secp43

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster


Alignment Length:173 Identity:40/173 - (23%)
Similarity:65/173 - (37%) Gaps:40/173 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAKVFVGSLPRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKG-QPI 67
            ||||.:.||...|         .||            ||.....|..::|:..:||.|..| :||
  Fly   129 TAKVILDSLGFSK---------GYG------------FVRFGIEDEQKSALYDMNGYIGLGTKPI 172

  Fly    68 VVEAGRPKYGPGGGSRGQPGSGD-NPGRRPSQVQGGGAD-KRPHESNTNFKRNFREEVGGRFSNE 130
            .:....||  |.....|..|.|: |.|........||.| .:.::..:.:.:.::...|  :..:
  Fly   173 KICNAVPK--PKSELGGAVGEGNTNYGYGSGMTAAGGTDYSQYYDPTSTYWQGYQAWQG--YYEQ 233

  Fly   131 GPRSSNSSAAKFGPVRNESN------------YRQQRSAPYSK 161
            ...|...:||.:....::|:            :..||||.|.:
  Fly   234 AGASITDAAAYYQQAMSQSHSNPQTLAQHAEAWSAQRSAQYEQ 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 17/64 (27%)
PABP-1234 <18..173 CDD:130689 33/159 (21%)
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:410022
RRM2_SECp43_like 99..178 CDD:409781 19/69 (28%)
Trnau1ap 210..330 CDD:465438 10/69 (14%)
Blue background indicates that the domain is not in the aligned region.

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