DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and Rbp9

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:391 Identity:89/391 - (22%)
Similarity:126/391 - (32%) Gaps:107/391 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NTTAK----VFVGSL-PRCKPEELRRLFTNYGSVVECDVM-----NRC---AFVHLENTDMAEAA 53
            ||.|.    :||.:| |..:...|.:||..:|:|....|:     |:|   .||.:.|.:.|..|
  Fly   349 NTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLA 413

  Fly    54 IAALNGTIFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRN 118
            |.:|||... |..::..:.:...........:..:..|.....:.:...|.....|..::|.   
  Fly   414 IQSLNGYTL-GNRVLQVSFKTNKNKQTXLLTKLAAVVNANAAAAALAANGLVLHNHHHHSNI--- 474

  Fly   119 FREEVGGRFSNEGPRSSNSSAAKFGP----VRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKF 179
                  |..:|....|:..|||.| |    |.:.||.||...        ||.:||..   :.|.
  Fly   475 ------GSINNNSNNSNGCSAAAF-PLGKYVNHSSNNRQHNI--------NNSTSNTS---KQKP 521

  Fly   180 AGGGKFGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPTSG--YRGGGNNSDFQGGSSSSGGG 242
            |       |..|           :..|...|.|.....:.|:|  ......||.....|:|||..
  Fly   522 A-------STSN-----------KQQSMAPPKRLASSTAATTGDLAATAATNSSSSSHSASSGDA 568

  Fly   243 GSVNQRAGGGGPGPSH------------VRQDRRGFALPVEHQQQQMGFGRF------------G 283
            |:....|.......|.            ..:.:..:.|..:..|.|..|.:|            .
  Fly   569 GATGTAASSSSSSSSTNNNILKTSTKFIYNKPQNQYELLQQQLQLQQEFAQFLTNVANSAATPSS 633

  Fly   284 NGPMNSGNRGTNGGNPPGGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINA 348
            ||..||.|:...||....|.|......|                      ||||  |.|.||.|.
  Fly   634 NGSANSTNQRNGGGTIGMGLGMSANSAG----------------------GGSG--NKNSNGNNG 674

  Fly   349 Y 349
            |
  Fly   675 Y 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 22/76 (29%)
PABP-1234 <18..173 CDD:130689 39/166 (23%)
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 25/89 (28%)

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