DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7903 and CG42458

DIOPT Version :9

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_996010.2 Gene:CG42458 / 2768945 FlyBaseID:FBgn0259935 Length:711 Species:Drosophila melanogaster


Alignment Length:79 Identity:27/79 - (34%)
Similarity:35/79 - (44%) Gaps:22/79 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 QPGRRNFKNSPTSGYRGGGNNSDFQGGSSSS-----GGGGSVNQRAGGGGPGPSHVRQDRR---- 264
            |.||:....|.|      ||:.|:...|..|     ||||     |||||......::.:|    
  Fly    96 QIGRKRQNVSKT------GNDWDYFYDSYCSSALLRGGGG-----AGGGGSNGVRAKKRKRLMTN 149

  Fly   265 --GFALPVEHQQQQ 276
              |.|:.|:.||||
  Fly   150 GGGLAVAVQQQQQQ 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM <4..168 CDD:223796
RRM_SF 6..70 CDD:302621
CG42458NP_996010.2 RRM <11..>89 CDD:223796
RRM_hnRNPC_like 20..87 CDD:240787
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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