DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and sgnh-1

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_500666.2 Gene:sgnh-1 / 177260 WormBaseID:WBGene00020354 Length:177 Species:Caenorhabditis elegans


Alignment Length:105 Identity:26/105 - (24%)
Similarity:42/105 - (40%) Gaps:25/105 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLP-RCKPEELRRLFTNYGSVVECDV--------MNRCAFVHLENTDMAEAAIAALNGTIF 62
            |:||::. :....|:...|...|.|....:        ....|||..:..:..:.|: .|:||:|
 Worm    48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLAL-VLSGTMF 111

  Fly    63 KGQPIVVEAGRPKYGPGGG--------------SRGQPGS 88
            :.:.|:|...|.. .||.|              |.|:|||
 Worm   112 RNRKIMVTLKRTN-KPGMGRTATAQKPAHFAKSSHGKPGS 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 16/71 (23%)
PABP-1234 <18..173 CDD:130689 23/93 (25%)
sgnh-1NP_500666.2 RRM_II_PABPs 47..119 CDD:409747 16/71 (23%)

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