Protein Alignment CG7903 and Pabpc1

DIOPT Version :10

• Sequence 1: NP_651755.2
• Gene: CG7903 / 43554
• FlyBaseID: FBgn0039730
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_599180.1
• Gene: Pabpc1 / 171350
• RGDID: 619838
• Length: 636
• Species: Rattus norvegicus
• Alignment Length: 184
• Identity: 44/184 - (23%)
• Similarity: 71/184 - (38%)
• Gaps: 51/184 - (27%)

  Fly     7 VFVGSLPR-CKPEELRRLFTNYGSVVECDVMNRC--------AFVHLENTDMAEAAIAALNGTIF 62
            :|:.:|.: ...:.|...|:.:|:::.|.|:  |        .|||.|..:.||.||..:||.:.
  Rat   101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVV--CDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163

  Fly    63 KGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFRE------ 121
            ..:.:.|  ||.|                 .|:..:.:.|.   |..|....:.:||.|
  Rat   164 NDRKVFV--GRFK-----------------SRKEREAELGA---RAKEFTNVYIKNFGEDMDDER 206

  Fly   122 --EVGGRFSNEGPRSS------NSSAAK-FGPVRNESNYRQQRSAPYSKGPPNN 166
              |:.|:|   ||..|      .|..:| ||.|..|.:...|::.....|...|
  Rat   207 LKELFGKF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELN 257

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG7903	NP_651755.2	RRM_SF	6..70	CDD:473069	18/71 (25%)
		PABP-1234	<18..173	CDD:130689	42/172 (24%)
Pabpc1	NP_599180.1	PABP-1234	11..615	CDD:130689	44/184 (24%)
		UNR-binding. /evidence=ECO:0000250	166..289		26/117 (22%)