DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and CSTF2

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:441 Identity:96/441 - (21%)
Similarity:136/441 - (30%) Gaps:130/441 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VFVGSLP-RCKPEELRRLFTNYGSVV--------ECDVMNRCAFVHLENTDMAEAAIAALNGTIF 62
            ||||::| ....|:|:.:|:..|.||        |........|...::.:.|.:|:..|||..|
Human    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly    63 KGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGRF 127
            .|:.:.|:              ...|..|.....|...|....:.|:              |...
Human    83 SGRALRVD--------------NAASEKNKEELKSLGTGAPVIESPY--------------GETI 119

  Fly   128 SNE-GPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGS--- 188
            |.| .|.|.:.:.|...|.:.....:|.:..          ..|..|..||......:...:   
Human   120 SPEDAPESISKAVASLPPEQMFELMKQMKLC----------VQNSPQEARNMLLQNPQLAYALLQ 174

  Fly   189 ---------------------------AGNEGRFGSNRFQQRDNSGPQP--GRRNFKNSPTSGYR 224
                                       |||                |||  |.     .|.||..
Human   175 AQVVMRIVDPEIALKILHRQTNIPTLIAGN----------------PQPVHGA-----GPGSGSN 218

  Fly   225 GGGNNSDFQGGSSSSGGGGSVN------QRAGGGG---PG--PSHVRQDRRGFALPVEHQQQQMG 278
            ...|..:.|...:.|.||..||      |.:..||   ||  |:.|.....|...|....|.|:|
Human   219 VSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVG 283

  Fly   279 FGRFGNGPMN-SGNRGTNGGNP--PGGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRN 340
            ..  |:||:: ...:||...:|  |.|............|.|.:....|.|...|:.||..|...
Human   284 MP--GSGPVSMERGQGTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGSLPANVPTPRGLLGDAP 346

  Fly   341 HNQNG--INAYHSEFPPLGSGGGG---------PGQRNRFNGPRPGPNMGG 380
            ::..|  :.:...|..|.|..|..         ||..:|  ||.|....||
Human   347 NDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESR--GPPPHELRGG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 20/71 (28%)
PABP-1234 <18..173 CDD:130689 30/163 (18%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 83/394 (21%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 21/89 (24%)
CSTF2_hinge 112..191 CDD:433869 13/102 (13%)
PHA03378 <253..455 CDD:223065 39/147 (27%)
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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