DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and LOC1270935

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_309663.5 Gene:LOC1270935 / 1270935 VectorBaseID:AGAMI1_003918 Length:569 Species:Anopheles gambiae


Alignment Length:400 Identity:97/400 - (24%)
Similarity:137/400 - (34%) Gaps:84/400 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AKVFVGSLPR-CKPEELRRLFTNYGSVVECDV---MNRCAFVHLENTDMAEAAIAALNGTIFKGQ 65
            :|:|:|.|.. ...:::|..|:.||.|.:..:   ....|||...:..:|::...  ...:.||.
Mosquito   201 SKIFLGRLTEDINSDDIRDYFSKYGEVTDVFIPKPFRAFAFVTFIDPHVAQSLCG--EDHLIKGT 263

  Fly    66 PIVVEAG--RPKYGPGGGSRGQPGSG----DNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVG 124
            .:.|...  ||::|...| :||.|..    |..||      |||.......|..|   ::....|
Mosquito   264 SVYVSTASPRPEHGRHHG-KGQMGGNFSNYDERGR------GGGGSGVGGSSGAN---DYHRGGG 318

  Fly   125 GRFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSA 189
            |.....|......:.....|..|.|.:..........||         .|:.|..:|.   ||..
Mosquito   319 GGGGGGGGGGGGHAVGPHVPAPNSSYHHGSGGGSEGAGP---------GGYNNMQSGN---GGGC 371

  Fly   190 GNEGRFGSNRF--QQRDN-----SGPQPGRRNFKNSPTSGYRGGGNNSDFQGG---------SSS 238
            ..:..:..|.:  |.|.|     |.|........:|..:|.||||......||         |.|
Mosquito   372 SQQPIWNYNEYTAQNRQNNSNIESMPNLQALGINSSGPNGQRGGGVGGGLHGGHHAGMGNHLSGS 436

  Fly   239 SGGGGSVNQRAGGGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNS-------------G 290
            .|.|||     ..||||.:       |..:...|.....|.......|:|.             |
Mosquito   437 GGAGGS-----APGGPGSN-------GAGVIGAHGGPAAGNMNLYQMPINPAIIAAALSQWSLIG 489

  Fly   291 NRGTNGGNPPGGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINAYHSEFPP 355
            |:..|.....||.|   |.||.....:.:::....|.|||...||:.|     .|..|...|:..
Mosquito   490 NQMHNTAQGAGGPG---GPGGPGAPGQANANVPGGPAGGPPGPGGAAG-----PGPGASEQEYLS 546

  Fly   356 L-GSGGGGPG 364
            . |:|.|.||
Mosquito   547 WNGTGNGAPG 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 15/67 (22%)
PABP-1234 <18..173 CDD:130689 35/163 (21%)
LOC1270935XP_309663.5 TDP43_N 11..85 CDD:465833
RRM1_TDP43 116..189 CDD:409760
RRM2_TDP43 201..270 CDD:409761 16/70 (23%)
Blue background indicates that the domain is not in the aligned region.

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