DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7896 and caps

DIOPT Version :10

Sequence 1:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:814 Identity:182/814 - (22%)
Similarity:266/814 - (32%) Gaps:328/814 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   664 IHPRLREIRAANNKFSFFPAELISTLQY---LEHIDLSHNQLKTIEELDFARLPRLRVLLVANNQ 725
            ::|.::.:...|||..    .:.|::|:   |..:|||.|.:.||.|..|               
  Fly    70 LNPAIQRLVIKNNKLK----TIDSSMQFYAQLTFLDLSFNDMLTIPERSF--------------- 115

  Fly   726 LDMVSEMAFHNSTQLQILDLAHNNLDRIGERTFEGLVRLEQLNLEGNRLSELSDGVFERTKLQML 790
                   |:|  .:||.|.|.||.:.::..:||.||..:..|||.||.::||....|  :.:..|
  Fly   116 -------AYH--AKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTF--SPMVKL 169

  Fly   791 ENINLAHNRFEYAPLNALQRQFFFVSSVD------LSHNKIKELPGDDSIMVNIKRIDLSFNPLS 849
            ..:||..||..:...:||       ..:|      |..|.:..:||           :|:|..|.
  Fly   170 AELNLGQNRISHIDPHAL-------DGLDNLRVLYLDDNTLTTVPG-----------ELTFQALH 216

  Fly   850 SKA-----VHNVLNEP-------KTVRELSLAGTGIENLE---LLETPFLQFLNLSHNKLKNVKP 899
            |.|     .::.:..|       |.:..|.|.|.|:.|:.   |.....|:||:||.|:|..:..
  Fly   217 SLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPT 281

  Fly   900 EVFQRVTLLETLDLSSNQLESLEDLSMAWPQLQVLQSLDVSNNSFEIVSQSNFGKLEMLRSLRLS 964
            ..|||:..||                          .|::..|.||::|...|..|..||.|.|:
  Fly   282 AAFQRLGRLE--------------------------QLNIGQNDFEVISSGAFSGLRELRHLELT 320

  Fly   965 HLPQCTRIEKNAFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGLEVLDIEVKDSSIGSEQIQPL 1029
            ...:..|:|..||....|                                              |
  Fly   321 GAQRLRRVESGAFSGNTN----------------------------------------------L 339

  Fly  1030 KHPRLKSLGIRGDRLKSISSGTLAGLKSNDLSVQLRNTSLNALPPALLFPVPRSSHLSLNVEGSK 1094
            :|..|.|    ..:|..:||..|.||                  |.|...|.:::.||...||  
  Fly   340 EHLNLSS----NKQLNELSSIALGGL------------------PHLSTVVLKANQLSSLDEG-- 380

  Fly  1095 ITVLVPQFLNALEDRRASLQLQGLASNPIVCDCNARALRRWLPSSGMPDVTCASPAYLLNRKLIE 1159
               |||.         |.||...|:.||..|||....||                          
  Fly   381 ---LVPW---------ADLQTLDLSENPFECDCRLLWLR-------------------------- 407

  Fly  1160 VGDDELTCDARRMTSSTSRPTASVPHLLKTSSQLVTRSSSTTEEPLIIWSLEPTQPPSLKKMKTK 1224
                                     ||      ||:|::|....|:|.     ..|.:|:.:   
  Fly   408 -------------------------HL------LVSRNASGQYAPVIC-----AYPTALRDL--- 433

  Fly  1225 APLMKAQSPII-----SNDDTLIIGIVGGVVAFIAI-----LIIIICIIRLR----------MSN 1269
             ||.....|::     :.....||||:  |||..|:     |::..|..|:|          ...
  Fly   434 -PLAHLAEPLLGCAHGAASKQAIIGIL--VVACAALITTLALVLYTCRHRIREMLKGHSALGRKE 495

  Fly  1270 AEYQQNAT----MIGIPAGMQMGAHNAAYNYKNGAG---------AALYAVPP------------ 1309
            .|||:..:    |...|.| ..|.|.||..|...||         ..|.|.||            
  Fly   496 REYQKTFSDEEYMSRPPPG-GGGVHPAAGGYPYIAGNSRMIPVTELXLEAPPPPQLRGRGGGGGA 559

  Fly  1310 -------YHATLPHKAASIHQSSQNLSQ-----------RQQQQQQQQQVAAAAAAYSTMSRMSY 1356
                   ....:|   :::.|:|.:.:|           :|||.||||..:....:...|..:: 
  Fly   560 STASGAVQQLQVP---SAVDQASNSFAQLSHIHYMTNNGQQQQAQQQQSTSKMHHSQQDMRLLA- 620

  Fly  1357 FSGAGGGNGDGAESLTHQHP---------HQHQP 1381
               ..||....|.||....|         |..||
  Fly   621 ---CNGGKPLNATSLPRHRPPVVQESTLSHYSQP 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7896NP_651754.1 PRK15370 20..>410 CDD:185268
leucine-rich repeat 109..132 CDD:275380
leucine-rich repeat 133..161 CDD:275380
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..257 CDD:275380
PLN00113 237..>750 CDD:215061 23/88 (26%)
leucine-rich repeat 258..281 CDD:275380
leucine-rich repeat 282..329 CDD:275380
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380
leucine-rich repeat 378..401 CDD:275380
leucine-rich repeat 402..425 CDD:275380
leucine-rich repeat 428..451 CDD:275380
leucine-rich repeat 452..473 CDD:275380
leucine-rich repeat 477..497 CDD:275378
leucine-rich repeat 500..523 CDD:275380
leucine-rich repeat 524..547 CDD:275380
leucine-rich repeat 548..571 CDD:275380
leucine-rich repeat 572..595 CDD:275380
leucine-rich repeat 596..619 CDD:275380
leucine-rich repeat 620..643 CDD:275380
leucine-rich repeat 644..667 CDD:275380 0/2 (0%)
leucine-rich repeat 668..691 CDD:275380 4/22 (18%)
LRR <684..1020 CDD:443914 84/359 (23%)
leucine-rich repeat 692..715 CDD:275380 9/22 (41%)
leucine-rich repeat 716..739 CDD:275380 2/22 (9%)
leucine-rich repeat 740..761 CDD:275380 8/20 (40%)
leucine-rich repeat 764..789 CDD:275380 8/24 (33%)
leucine-rich repeat 790..810 CDD:275380 7/19 (37%)
leucine-rich repeat 818..850 CDD:275380 8/37 (22%)
leucine-rich repeat 863..883 CDD:275378 6/22 (27%)
leucine-rich repeat 884..907 CDD:275380 10/22 (45%)
leucine-rich repeat 908..933 CDD:275380 2/24 (8%)
leucine-rich repeat 934..955 CDD:275380 6/20 (30%)
leucine-rich repeat 958..982 CDD:275380 8/23 (35%)
leucine-rich repeat 983..1055 CDD:275380 8/71 (11%)
leucine-rich repeat 1009..1033 CDD:275380 2/23 (9%)
leucine-rich repeat 1058..1085 CDD:275380 3/26 (12%)
LRRCT 1121..1168 CDD:214507 7/46 (15%)
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 5/24 (21%)
LRR_8 96..155 CDD:404697 26/82 (32%)
leucine-rich repeat 97..120 CDD:275380 11/46 (24%)
leucine-rich repeat 121..144 CDD:275380 10/22 (45%)
LRR 135..>398 CDD:443914 91/390 (23%)
leucine-rich repeat 145..168 CDD:275380 8/24 (33%)
leucine-rich repeat 169..192 CDD:275380 7/29 (24%)
leucine-rich repeat 193..217 CDD:275380 7/34 (21%)
leucine-rich repeat 218..241 CDD:275380 2/22 (9%)
leucine-rich repeat 242..265 CDD:275380 6/22 (27%)
leucine-rich repeat 266..289 CDD:275380 10/22 (45%)
leucine-rich repeat 290..313 CDD:275380 9/48 (19%)
leucine-rich repeat 314..335 CDD:275380 8/20 (40%)
leucine-rich repeat 339..363 CDD:275380 10/45 (22%)
LRRCT 395..445 CDD:214507 20/115 (17%)
Blue background indicates that the domain is not in the aligned region.

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